miRNA display CGI


Results 1 - 20 of 57 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3605 5' -50.9 NC_001650.1 + 24940 1.13 0.006287
Target:  5'- uCCUUCCUGGACAGAAAGUCCCUGAUCa -3'
miRNA:   3'- -GGAAGGACCUGUCUUUCAGGGACUAG- -5'
3605 5' -50.9 NC_001650.1 + 121220 0.78 0.640261
Target:  5'- gCCUUCCUGGAgCGGugccucAAGUUCCUGGUg -3'
miRNA:   3'- -GGAAGGACCU-GUCu-----UUCAGGGACUAg -5'
3605 5' -50.9 NC_001650.1 + 101978 0.78 0.598478
Target:  5'- ---aCCUGGGCucGGGGUCCCUGAUCu -3'
miRNA:   3'- ggaaGGACCUGucUUUCAGGGACUAG- -5'
3605 5' -50.9 NC_001650.1 + 60938 0.75 0.800342
Target:  5'- gCCgaCCUGGACaAGAagaugGAGUUCUUGAUCg -3'
miRNA:   3'- -GGaaGGACCUG-UCU-----UUCAGGGACUAG- -5'
3605 5' -50.9 NC_001650.1 + 121851 0.74 0.818301
Target:  5'- uCCUcggggggCCUGGGCAGGAAGaUCCUGAg- -3'
miRNA:   3'- -GGAa------GGACCUGUCUUUCaGGGACUag -5'
3605 5' -50.9 NC_001650.1 + 115602 0.73 0.882447
Target:  5'- aCggCCUGcGACGGggGGaUCCUGGUCu -3'
miRNA:   3'- gGaaGGAC-CUGUCuuUCaGGGACUAG- -5'
3605 5' -50.9 NC_001650.1 + 158851 0.71 0.926627
Target:  5'- cCCguagccgCCUGGAgGGAgggggggacAGGUCCCUGAc- -3'
miRNA:   3'- -GGaa-----GGACCUgUCU---------UUCAGGGACUag -5'
3605 5' -50.9 NC_001650.1 + 75422 0.71 0.937025
Target:  5'- aCC-UCCUGGACGGucccGUCaucgaaCCUGGUCa -3'
miRNA:   3'- -GGaAGGACCUGUCuuu-CAG------GGACUAG- -5'
3605 5' -50.9 NC_001650.1 + 59262 0.71 0.941851
Target:  5'- aCUgcgUCCUGGGCAGGAAGgugCCCcccgaGAUa -3'
miRNA:   3'- -GGa--AGGACCUGUCUUUCa--GGGa----CUAg -5'
3605 5' -50.9 NC_001650.1 + 132016 0.7 0.95486
Target:  5'- cCCggCCUGaACAGGAAGgCCCUGGg- -3'
miRNA:   3'- -GGaaGGACcUGUCUUUCaGGGACUag -5'
3605 5' -50.9 NC_001650.1 + 113955 0.7 0.962342
Target:  5'- gCCaUCCUGGACAGGAGGgCCauuuUCa -3'
miRNA:   3'- -GGaAGGACCUGUCUUUCaGGgacuAG- -5'
3605 5' -50.9 NC_001650.1 + 74397 0.7 0.950765
Target:  5'- gCCaUCCUGGACG--AGGUcacccccgacaCCCUGGUCu -3'
miRNA:   3'- -GGaAGGACCUGUcuUUCA-----------GGGACUAG- -5'
3605 5' -50.9 NC_001650.1 + 122716 0.7 0.958717
Target:  5'- gCCUcCCUGGccGCGGGAAGcugcugcuucUCCCUGAc- -3'
miRNA:   3'- -GGAaGGACC--UGUCUUUC----------AGGGACUag -5'
3605 5' -50.9 NC_001650.1 + 24115 0.7 0.962342
Target:  5'- ---cCCUGGACGuGGAGGUCCCc-GUCa -3'
miRNA:   3'- ggaaGGACCUGU-CUUUCAGGGacUAG- -5'
3605 5' -50.9 NC_001650.1 + 62647 0.7 0.95486
Target:  5'- cCCUggaCCUGGACuuGGAccuGGUCCUUGAc- -3'
miRNA:   3'- -GGAa--GGACCUG--UCUu--UCAGGGACUag -5'
3605 5' -50.9 NC_001650.1 + 152039 0.69 0.977178
Target:  5'- uCCUggUCCUGGAUcuGGuccuGGUCCUgGAUCu -3'
miRNA:   3'- -GGA--AGGACCUG--UCuu--UCAGGGaCUAG- -5'
3605 5' -50.9 NC_001650.1 + 152003 0.69 0.977178
Target:  5'- uCCUggUCCUGGAUcuGGuccuGGUCCUgGAUCu -3'
miRNA:   3'- -GGA--AGGACCUG--UCuu--UCAGGGaCUAG- -5'
3605 5' -50.9 NC_001650.1 + 151943 0.69 0.977178
Target:  5'- uCCUggUCCUGGAUcuGGuccuGGUCCUgGAUCu -3'
miRNA:   3'- -GGA--AGGACCUG--UCuu--UCAGGGaCUAG- -5'
3605 5' -50.9 NC_001650.1 + 151907 0.69 0.977178
Target:  5'- uCCUggUCCUGGAUcuGGuccuGGUCCUgGAUCu -3'
miRNA:   3'- -GGA--AGGACCUG--UCuu--UCAGGGaCUAG- -5'
3605 5' -50.9 NC_001650.1 + 60519 0.69 0.971876
Target:  5'- gCCggggUCCUGGGCAGAGgcggcGGUCUguUUGGUg -3'
miRNA:   3'- -GGa---AGGACCUGUCUU-----UCAGG--GACUAg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.