Results 1 - 20 of 57 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
3605 | 5' | -50.9 | NC_001650.1 | + | 24940 | 1.13 | 0.006287 |
Target: 5'- uCCUUCCUGGACAGAAAGUCCCUGAUCa -3' miRNA: 3'- -GGAAGGACCUGUCUUUCAGGGACUAG- -5' |
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3605 | 5' | -50.9 | NC_001650.1 | + | 101978 | 0.78 | 0.598478 |
Target: 5'- ---aCCUGGGCucGGGGUCCCUGAUCu -3' miRNA: 3'- ggaaGGACCUGucUUUCAGGGACUAG- -5' |
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3605 | 5' | -50.9 | NC_001650.1 | + | 121220 | 0.78 | 0.640261 |
Target: 5'- gCCUUCCUGGAgCGGugccucAAGUUCCUGGUg -3' miRNA: 3'- -GGAAGGACCU-GUCu-----UUCAGGGACUAg -5' |
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3605 | 5' | -50.9 | NC_001650.1 | + | 60938 | 0.75 | 0.800342 |
Target: 5'- gCCgaCCUGGACaAGAagaugGAGUUCUUGAUCg -3' miRNA: 3'- -GGaaGGACCUG-UCU-----UUCAGGGACUAG- -5' |
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3605 | 5' | -50.9 | NC_001650.1 | + | 121851 | 0.74 | 0.818301 |
Target: 5'- uCCUcggggggCCUGGGCAGGAAGaUCCUGAg- -3' miRNA: 3'- -GGAa------GGACCUGUCUUUCaGGGACUag -5' |
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3605 | 5' | -50.9 | NC_001650.1 | + | 115602 | 0.73 | 0.882447 |
Target: 5'- aCggCCUGcGACGGggGGaUCCUGGUCu -3' miRNA: 3'- gGaaGGAC-CUGUCuuUCaGGGACUAG- -5' |
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3605 | 5' | -50.9 | NC_001650.1 | + | 158851 | 0.71 | 0.926627 |
Target: 5'- cCCguagccgCCUGGAgGGAgggggggacAGGUCCCUGAc- -3' miRNA: 3'- -GGaa-----GGACCUgUCU---------UUCAGGGACUag -5' |
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3605 | 5' | -50.9 | NC_001650.1 | + | 75422 | 0.71 | 0.937025 |
Target: 5'- aCC-UCCUGGACGGucccGUCaucgaaCCUGGUCa -3' miRNA: 3'- -GGaAGGACCUGUCuuu-CAG------GGACUAG- -5' |
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3605 | 5' | -50.9 | NC_001650.1 | + | 59262 | 0.71 | 0.941851 |
Target: 5'- aCUgcgUCCUGGGCAGGAAGgugCCCcccgaGAUa -3' miRNA: 3'- -GGa--AGGACCUGUCUUUCa--GGGa----CUAg -5' |
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3605 | 5' | -50.9 | NC_001650.1 | + | 74397 | 0.7 | 0.950765 |
Target: 5'- gCCaUCCUGGACG--AGGUcacccccgacaCCCUGGUCu -3' miRNA: 3'- -GGaAGGACCUGUcuUUCA-----------GGGACUAG- -5' |
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3605 | 5' | -50.9 | NC_001650.1 | + | 132016 | 0.7 | 0.95486 |
Target: 5'- cCCggCCUGaACAGGAAGgCCCUGGg- -3' miRNA: 3'- -GGaaGGACcUGUCUUUCaGGGACUag -5' |
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3605 | 5' | -50.9 | NC_001650.1 | + | 62647 | 0.7 | 0.95486 |
Target: 5'- cCCUggaCCUGGACuuGGAccuGGUCCUUGAc- -3' miRNA: 3'- -GGAa--GGACCUG--UCUu--UCAGGGACUag -5' |
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3605 | 5' | -50.9 | NC_001650.1 | + | 122716 | 0.7 | 0.958717 |
Target: 5'- gCCUcCCUGGccGCGGGAAGcugcugcuucUCCCUGAc- -3' miRNA: 3'- -GGAaGGACC--UGUCUUUC----------AGGGACUag -5' |
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3605 | 5' | -50.9 | NC_001650.1 | + | 113955 | 0.7 | 0.962342 |
Target: 5'- gCCaUCCUGGACAGGAGGgCCauuuUCa -3' miRNA: 3'- -GGaAGGACCUGUCUUUCaGGgacuAG- -5' |
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3605 | 5' | -50.9 | NC_001650.1 | + | 24115 | 0.7 | 0.962342 |
Target: 5'- ---cCCUGGACGuGGAGGUCCCc-GUCa -3' miRNA: 3'- ggaaGGACCUGU-CUUUCAGGGacUAG- -5' |
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3605 | 5' | -50.9 | NC_001650.1 | + | 53002 | 0.69 | 0.964744 |
Target: 5'- uCCUgcgCCcGGGCcccgAGGgccgccgccgccgcGAGUCCCUGAUCu -3' miRNA: 3'- -GGAa--GGaCCUG----UCU--------------UUCAGGGACUAG- -5' |
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3605 | 5' | -50.9 | NC_001650.1 | + | 91375 | 0.69 | 0.968607 |
Target: 5'- aCCgugUCCUGGgaguacuucacguACAGccucuGUCCCUGGUUg -3' miRNA: 3'- -GGa--AGGACC-------------UGUCuuu--CAGGGACUAG- -5' |
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3605 | 5' | -50.9 | NC_001650.1 | + | 62611 | 0.69 | 0.970125 |
Target: 5'- gCCUgggCCUGGguuccuccccaaccaACAGAGuAGccCCCUGAUCu -3' miRNA: 3'- -GGAa--GGACC---------------UGUCUU-UCa-GGGACUAG- -5' |
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3605 | 5' | -50.9 | NC_001650.1 | + | 140074 | 0.69 | 0.971876 |
Target: 5'- gCUUCCUGGACcccuGGAuuGcUUCCUGAa- -3' miRNA: 3'- gGAAGGACCUG----UCUuuC-AGGGACUag -5' |
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3605 | 5' | -50.9 | NC_001650.1 | + | 60519 | 0.69 | 0.971876 |
Target: 5'- gCCggggUCCUGGGCAGAGgcggcGGUCUguUUGGUg -3' miRNA: 3'- -GGa---AGGACCUGUCUU-----UCAGG--GACUAg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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