miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3605 5' -50.9 NC_001650.1 + 12513 0.67 0.992419
Target:  5'- cCCUUCUcucuUGuACAuGggGGUCCCUGGg- -3'
miRNA:   3'- -GGAAGG----ACcUGU-CuuUCAGGGACUag -5'
3605 5' -50.9 NC_001650.1 + 24115 0.7 0.962342
Target:  5'- ---cCCUGGACGuGGAGGUCCCc-GUCa -3'
miRNA:   3'- ggaaGGACCUGU-CUUUCAGGGacUAG- -5'
3605 5' -50.9 NC_001650.1 + 24739 0.66 0.997412
Target:  5'- aCUUUCUGucCAGGAAGgacaccuucUCCCUGggCg -3'
miRNA:   3'- gGAAGGACcuGUCUUUC---------AGGGACuaG- -5'
3605 5' -50.9 NC_001650.1 + 24940 1.13 0.006287
Target:  5'- uCCUUCCUGGACAGAAAGUCCCUGAUCa -3'
miRNA:   3'- -GGAAGGACCUGUCUUUCAGGGACUAG- -5'
3605 5' -50.9 NC_001650.1 + 50549 0.68 0.981706
Target:  5'- gCCUUCCUGG-CGGuGGAGUgCCCgcgcaacccGGUCa -3'
miRNA:   3'- -GGAAGGACCuGUC-UUUCA-GGGa--------CUAG- -5'
3605 5' -50.9 NC_001650.1 + 53002 0.69 0.964744
Target:  5'- uCCUgcgCCcGGGCcccgAGGgccgccgccgccgcGAGUCCCUGAUCu -3'
miRNA:   3'- -GGAa--GGaCCUG----UCU--------------UUCAGGGACUAG- -5'
3605 5' -50.9 NC_001650.1 + 59262 0.71 0.941851
Target:  5'- aCUgcgUCCUGGGCAGGAAGgugCCCcccgaGAUa -3'
miRNA:   3'- -GGa--AGGACCUGUCUUUCa--GGGa----CUAg -5'
3605 5' -50.9 NC_001650.1 + 60519 0.69 0.971876
Target:  5'- gCCggggUCCUGGGCAGAGgcggcGGUCUguUUGGUg -3'
miRNA:   3'- -GGa---AGGACCUGUCUU-----UCAGG--GACUAg -5'
3605 5' -50.9 NC_001650.1 + 60938 0.75 0.800342
Target:  5'- gCCgaCCUGGACaAGAagaugGAGUUCUUGAUCg -3'
miRNA:   3'- -GGaaGGACCUG-UCU-----UUCAGGGACUAG- -5'
3605 5' -50.9 NC_001650.1 + 62611 0.69 0.970125
Target:  5'- gCCUgggCCUGGguuccuccccaaccaACAGAGuAGccCCCUGAUCu -3'
miRNA:   3'- -GGAa--GGACC---------------UGUCUU-UCa-GGGACUAG- -5'
3605 5' -50.9 NC_001650.1 + 62647 0.7 0.95486
Target:  5'- cCCUggaCCUGGACuuGGAccuGGUCCUUGAc- -3'
miRNA:   3'- -GGAa--GGACCUG--UCUu--UCAGGGACUag -5'
3605 5' -50.9 NC_001650.1 + 71464 0.68 0.981706
Target:  5'- ----gCUGGuACAGggGGUucuccgcccCCCUGAUCa -3'
miRNA:   3'- ggaagGACC-UGUCuuUCA---------GGGACUAG- -5'
3605 5' -50.9 NC_001650.1 + 72294 0.68 0.979535
Target:  5'- ---aCCUGGugGGGAGGUUCgUGAa- -3'
miRNA:   3'- ggaaGGACCugUCUUUCAGGgACUag -5'
3605 5' -50.9 NC_001650.1 + 72545 0.67 0.992313
Target:  5'- cCCaUCCUGGACcaccuggAGAAcgGGaCCCUGAg- -3'
miRNA:   3'- -GGaAGGACCUG-------UCUU--UCaGGGACUag -5'
3605 5' -50.9 NC_001650.1 + 73398 0.67 0.990071
Target:  5'- uCCUUCCUGGugACGGAGGGcagCCCc---- -3'
miRNA:   3'- -GGAAGGACC--UGUCUUUCa--GGGacuag -5'
3605 5' -50.9 NC_001650.1 + 74397 0.7 0.950765
Target:  5'- gCCaUCCUGGACG--AGGUcacccccgacaCCCUGGUCu -3'
miRNA:   3'- -GGaAGGACCUGUcuUUCA-----------GGGACUAG- -5'
3605 5' -50.9 NC_001650.1 + 75422 0.71 0.937025
Target:  5'- aCC-UCCUGGACGGucccGUCaucgaaCCUGGUCa -3'
miRNA:   3'- -GGaAGGACCUGUCuuu-CAG------GGACUAG- -5'
3605 5' -50.9 NC_001650.1 + 76036 0.66 0.995091
Target:  5'- aCUcCCgggaaggGGACGGAcAGUCCCaUGGUg -3'
miRNA:   3'- gGAaGGa------CCUGUCUuUCAGGG-ACUAg -5'
3605 5' -50.9 NC_001650.1 + 77829 0.67 0.993414
Target:  5'- gCCUcCCUGGGCgAGggGGcaaCCUGGacUCg -3'
miRNA:   3'- -GGAaGGACCUG-UCuuUCag-GGACU--AG- -5'
3605 5' -50.9 NC_001650.1 + 85865 0.68 0.979535
Target:  5'- cUCUUCCucuuUGGGgAGAGgucccAGUCCCUG-UCa -3'
miRNA:   3'- -GGAAGG----ACCUgUCUU-----UCAGGGACuAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.