miRNA display CGI


Results 21 - 40 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3606 5' -59.4 NC_001650.1 + 52777 0.66 0.781947
Target:  5'- aGGGACucgcggCGGcGGCgGCCcucggGGCCCGGg -3'
miRNA:   3'- aUCUUGua----GCU-CCGgCGGa----CCGGGCU- -5'
3606 5' -59.4 NC_001650.1 + 52868 0.68 0.656294
Target:  5'- cUGGGGCGauuccgcUCGAGGCUcacgGUCUGGCgCGAg -3'
miRNA:   3'- -AUCUUGU-------AGCUCCGG----CGGACCGgGCU- -5'
3606 5' -59.4 NC_001650.1 + 53898 0.69 0.637374
Target:  5'- -----gGUCGAGaGCCGgCUGGCCCu- -3'
miRNA:   3'- aucuugUAGCUC-CGGCgGACCGGGcu -5'
3606 5' -59.4 NC_001650.1 + 59052 0.7 0.567918
Target:  5'- -cGGACGUgGGGGCUcaucuGCCUcucccgGGCCCGAu -3'
miRNA:   3'- auCUUGUAgCUCCGG-----CGGA------CCGGGCU- -5'
3606 5' -59.4 NC_001650.1 + 59735 0.7 0.567918
Target:  5'- aGGGGCGUCGAggGGCC-CgUGGCCCc- -3'
miRNA:   3'- aUCUUGUAGCU--CCGGcGgACCGGGcu -5'
3606 5' -59.4 NC_001650.1 + 67208 0.67 0.763707
Target:  5'- cAGGGCGUaCGGGuGCCcggacaggaugaGCCUGGCCagCGAg -3'
miRNA:   3'- aUCUUGUA-GCUC-CGG------------CGGACCGG--GCU- -5'
3606 5' -59.4 NC_001650.1 + 74537 0.71 0.51945
Target:  5'- --uGGCAggGAGGCCGCCaccgUGGCCCu- -3'
miRNA:   3'- aucUUGUagCUCCGGCGG----ACCGGGcu -5'
3606 5' -59.4 NC_001650.1 + 75056 0.67 0.763707
Target:  5'- cAGAGC----GGGaCCGCCUGGCUCGc -3'
miRNA:   3'- aUCUUGuagcUCC-GGCGGACCGGGCu -5'
3606 5' -59.4 NC_001650.1 + 77867 0.66 0.772887
Target:  5'- cAGAGgGUgGAgaaGGCCGCgCUGGUCCu- -3'
miRNA:   3'- aUCUUgUAgCU---CCGGCG-GACCGGGcu -5'
3606 5' -59.4 NC_001650.1 + 77943 0.67 0.725967
Target:  5'- aGGAGCGggGGcGGCUGCgaGGCaCCGAg -3'
miRNA:   3'- aUCUUGUagCU-CCGGCGgaCCG-GGCU- -5'
3606 5' -59.4 NC_001650.1 + 79075 0.7 0.548363
Target:  5'- gAG-GCGUCG-GGCCccggGCCUGGCuCCGGg -3'
miRNA:   3'- aUCuUGUAGCuCCGG----CGGACCG-GGCU- -5'
3606 5' -59.4 NC_001650.1 + 86240 0.68 0.677127
Target:  5'- gAGGGCGaCGAGGCCaCCgaGGCCUGc -3'
miRNA:   3'- aUCUUGUaGCUCCGGcGGa-CCGGGCu -5'
3606 5' -59.4 NC_001650.1 + 108879 0.67 0.745025
Target:  5'- gAGGGCAUgGAGGacgcgcgccucaCCGCCUGcGUCCa- -3'
miRNA:   3'- aUCUUGUAgCUCC------------GGCGGAC-CGGGcu -5'
3606 5' -59.4 NC_001650.1 + 109757 0.7 0.538665
Target:  5'- gUGGGugAcCGAGGUgGCCUGGCCa-- -3'
miRNA:   3'- -AUCUugUaGCUCCGgCGGACCGGgcu -5'
3606 5' -59.4 NC_001650.1 + 110936 0.67 0.758146
Target:  5'- cUGGGGCugcUGAGGCUguugcugcugcggcaGCCUGGCCUGc -3'
miRNA:   3'- -AUCUUGua-GCUCCGG---------------CGGACCGGGCu -5'
3606 5' -59.4 NC_001650.1 + 111404 0.71 0.509944
Target:  5'- gGGGGCG-CG-GGCCGCCUgagccgccugGGCCUGAc -3'
miRNA:   3'- aUCUUGUaGCuCCGGCGGA----------CCGGGCU- -5'
3606 5' -59.4 NC_001650.1 + 115189 0.69 0.604507
Target:  5'- gAGGACGUCGgaccucacaaagucAGGCCuGCaCaGGCCCGGc -3'
miRNA:   3'- aUCUUGUAGC--------------UCCGG-CG-GaCCGGGCU- -5'
3606 5' -59.4 NC_001650.1 + 118292 0.67 0.735538
Target:  5'- cAGAGCuccaUGuAGGCCGCCacgcugacgGGCCUGAg -3'
miRNA:   3'- aUCUUGua--GC-UCCGGCGGa--------CCGGGCU- -5'
3606 5' -59.4 NC_001650.1 + 125043 0.67 0.725967
Target:  5'- gAGGACGccgggCGGGG-CGCCUcGCCCGGc -3'
miRNA:   3'- aUCUUGUa----GCUCCgGCGGAcCGGGCU- -5'
3606 5' -59.4 NC_001650.1 + 127043 0.7 0.567918
Target:  5'- aAGAucACGUCGcgauggacgagGGGgCGCCgGGCCCGGg -3'
miRNA:   3'- aUCU--UGUAGC-----------UCCgGCGGaCCGGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.