miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3606 5' -59.4 NC_001650.1 + 3280 0.66 0.781947
Target:  5'- aAGGAUAgccaauggGAGGCCuCCgGGCCCGGc -3'
miRNA:   3'- aUCUUGUag------CUCCGGcGGaCCGGGCU- -5'
3606 5' -59.4 NC_001650.1 + 6301 0.67 0.716318
Target:  5'- gGGAcucgaugcauauGCAUCGGGGCCuugggcaauaaaGCCccgGGCCCa- -3'
miRNA:   3'- aUCU------------UGUAGCUCCGG------------CGGa--CCGGGcu -5'
3606 5' -59.4 NC_001650.1 + 6688 0.67 0.745025
Target:  5'- uUAGGGCAUUG-GGCaauaaaGCCcaUGGCCCa- -3'
miRNA:   3'- -AUCUUGUAGCuCCGg-----CGG--ACCGGGcu -5'
3606 5' -59.4 NC_001650.1 + 6921 0.66 0.781947
Target:  5'- gAGGGCAUUG-GGCaauaaaGCCcuUGGCCCa- -3'
miRNA:   3'- aUCUUGUAGCuCCGg-----CGG--ACCGGGcu -5'
3606 5' -59.4 NC_001650.1 + 7056 0.68 0.705627
Target:  5'- uUAGGGCAUgGGGcaauaaaGCCcCCUGGCCCa- -3'
miRNA:   3'- -AUCUUGUAgCUC-------CGGcGGACCGGGcu -5'
3606 5' -59.4 NC_001650.1 + 7278 0.67 0.745025
Target:  5'- uUAGGGCAUUG-GGCaauaaaGCCcaUGGCCCa- -3'
miRNA:   3'- -AUCUUGUAGCuCCGg-----CGG--ACCGGGcu -5'
3606 5' -59.4 NC_001650.1 + 7390 0.67 0.745025
Target:  5'- uUAGGGCAUUG-GGCaauaaaGCCcaUGGCCCa- -3'
miRNA:   3'- -AUCUUGUAGCuCCGg-----CGG--ACCGGGcu -5'
3606 5' -59.4 NC_001650.1 + 25055 0.66 0.79088
Target:  5'- gGGAGCGaCGuGGCCaGCg-GGCCCGc -3'
miRNA:   3'- aUCUUGUaGCuCCGG-CGgaCCGGGCu -5'
3606 5' -59.4 NC_001650.1 + 25238 1.07 0.002161
Target:  5'- gUAGAACAUCGAGGCCGCCUGGCCCGAg -3'
miRNA:   3'- -AUCUUGUAGCUCCGGCGGACCGGGCU- -5'
3606 5' -59.4 NC_001650.1 + 27061 0.75 0.324952
Target:  5'- -uGAGCAgguaccucuUCGAGGCCcacuacaccaGCCUGGCCCa- -3'
miRNA:   3'- auCUUGU---------AGCUCCGG----------CGGACCGGGcu -5'
3606 5' -59.4 NC_001650.1 + 27445 0.67 0.735538
Target:  5'- -cGGGCAacUCGGuGCUGuaCCUGGCCCGGg -3'
miRNA:   3'- auCUUGU--AGCUcCGGC--GGACCGGGCU- -5'
3606 5' -59.4 NC_001650.1 + 30714 0.67 0.763707
Target:  5'- gAGAGCGagaggCGGGGCCGCgaGGaCgCGGa -3'
miRNA:   3'- aUCUUGUa----GCUCCGGCGgaCC-GgGCU- -5'
3606 5' -59.4 NC_001650.1 + 30864 0.72 0.445682
Target:  5'- gAGGAgGagGAcGGCCGCCUGGCCgaGAu -3'
miRNA:   3'- aUCUUgUagCU-CCGGCGGACCGGg-CU- -5'
3606 5' -59.4 NC_001650.1 + 35525 0.67 0.735538
Target:  5'- gUGGAAgGUCaGGGCCacaggcgugugGcCCUGGCCCGc -3'
miRNA:   3'- -AUCUUgUAGcUCCGG-----------C-GGACCGGGCu -5'
3606 5' -59.4 NC_001650.1 + 39848 0.67 0.745025
Target:  5'- cAGAGCua-----CCGCCUGGCCCGGg -3'
miRNA:   3'- aUCUUGuagcuccGGCGGACCGGGCU- -5'
3606 5' -59.4 NC_001650.1 + 46509 0.67 0.748793
Target:  5'- --cGGCGUCGGGGCCGgcggcgaccgggcgcCCUGGCUauuaGAg -3'
miRNA:   3'- aucUUGUAGCUCCGGC---------------GGACCGGg---CU- -5'
3606 5' -59.4 NC_001650.1 + 46610 0.67 0.763707
Target:  5'- aUGGAGCGgagGGGGCCGCCgcGGCgCa- -3'
miRNA:   3'- -AUCUUGUag-CUCCGGCGGa-CCGgGcu -5'
3606 5' -59.4 NC_001650.1 + 46799 0.67 0.763707
Target:  5'- gUGGGACG-CGAGaGCgGUCUGGUCCc- -3'
miRNA:   3'- -AUCUUGUaGCUC-CGgCGGACCGGGcu -5'
3606 5' -59.4 NC_001650.1 + 51029 0.66 0.80833
Target:  5'- -cGcGCGcCGGGGCCGCg-GuGCCCGAg -3'
miRNA:   3'- auCuUGUaGCUCCGGCGgaC-CGGGCU- -5'
3606 5' -59.4 NC_001650.1 + 52603 0.68 0.686998
Target:  5'- gGGAGCucugggAUgGGGGCCa-CUGGCCCGGg -3'
miRNA:   3'- aUCUUG------UAgCUCCGGcgGACCGGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.