Results 1 - 20 of 61 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3606 | 5' | -59.4 | NC_001650.1 | + | 75056 | 0.67 | 0.763707 |
Target: 5'- cAGAGC----GGGaCCGCCUGGCUCGc -3' miRNA: 3'- aUCUUGuagcUCC-GGCGGACCGGGCu -5' |
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3606 | 5' | -59.4 | NC_001650.1 | + | 125043 | 0.67 | 0.725967 |
Target: 5'- gAGGACGccgggCGGGG-CGCCUcGCCCGGc -3' miRNA: 3'- aUCUUGUa----GCUCCgGCGGAcCGGGCU- -5' |
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3606 | 5' | -59.4 | NC_001650.1 | + | 77943 | 0.67 | 0.725967 |
Target: 5'- aGGAGCGggGGcGGCUGCgaGGCaCCGAg -3' miRNA: 3'- aUCUUGUagCU-CCGGCGgaCCG-GGCU- -5' |
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3606 | 5' | -59.4 | NC_001650.1 | + | 27445 | 0.67 | 0.735538 |
Target: 5'- -cGGGCAacUCGGuGCUGuaCCUGGCCCGGg -3' miRNA: 3'- auCUUGU--AGCUcCGGC--GGACCGGGCU- -5' |
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3606 | 5' | -59.4 | NC_001650.1 | + | 118292 | 0.67 | 0.735538 |
Target: 5'- cAGAGCuccaUGuAGGCCGCCacgcugacgGGCCUGAg -3' miRNA: 3'- aUCUUGua--GC-UCCGGCGGa--------CCGGGCU- -5' |
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3606 | 5' | -59.4 | NC_001650.1 | + | 108879 | 0.67 | 0.745025 |
Target: 5'- gAGGGCAUgGAGGacgcgcgccucaCCGCCUGcGUCCa- -3' miRNA: 3'- aUCUUGUAgCUCC------------GGCGGAC-CGGGcu -5' |
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3606 | 5' | -59.4 | NC_001650.1 | + | 46509 | 0.67 | 0.748793 |
Target: 5'- --cGGCGUCGGGGCCGgcggcgaccgggcgcCCUGGCUauuaGAg -3' miRNA: 3'- aucUUGUAGCUCCGGC---------------GGACCGGg---CU- -5' |
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3606 | 5' | -59.4 | NC_001650.1 | + | 30714 | 0.67 | 0.763707 |
Target: 5'- gAGAGCGagaggCGGGGCCGCgaGGaCgCGGa -3' miRNA: 3'- aUCUUGUa----GCUCCGGCGgaCC-GgGCU- -5' |
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3606 | 5' | -59.4 | NC_001650.1 | + | 67208 | 0.67 | 0.763707 |
Target: 5'- cAGGGCGUaCGGGuGCCcggacaggaugaGCCUGGCCagCGAg -3' miRNA: 3'- aUCUUGUA-GCUC-CGG------------CGGACCGG--GCU- -5' |
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3606 | 5' | -59.4 | NC_001650.1 | + | 136628 | 0.68 | 0.686998 |
Target: 5'- gGGGGCGUCGGGG-CGCCcugaGGCuCCGc -3' miRNA: 3'- aUCUUGUAGCUCCgGCGGa---CCG-GGCu -5' |
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3606 | 5' | -59.4 | NC_001650.1 | + | 52603 | 0.68 | 0.686998 |
Target: 5'- gGGAGCucugggAUgGGGGCCa-CUGGCCCGGg -3' miRNA: 3'- aUCUUG------UAgCUCCGGcgGACCGGGCU- -5' |
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3606 | 5' | -59.4 | NC_001650.1 | + | 86240 | 0.68 | 0.677127 |
Target: 5'- gAGGGCGaCGAGGCCaCCgaGGCCUGc -3' miRNA: 3'- aUCUUGUaGCUCCGGcGGa-CCGGGCu -5' |
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3606 | 5' | -59.4 | NC_001650.1 | + | 30864 | 0.72 | 0.445682 |
Target: 5'- gAGGAgGagGAcGGCCGCCUGGCCgaGAu -3' miRNA: 3'- aUCUUgUagCU-CCGGCGGACCGGg-CU- -5' |
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3606 | 5' | -59.4 | NC_001650.1 | + | 74537 | 0.71 | 0.51945 |
Target: 5'- --uGGCAggGAGGCCGCCaccgUGGCCCu- -3' miRNA: 3'- aucUUGUagCUCCGGCGG----ACCGGGcu -5' |
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3606 | 5' | -59.4 | NC_001650.1 | + | 109757 | 0.7 | 0.538665 |
Target: 5'- gUGGGugAcCGAGGUgGCCUGGCCa-- -3' miRNA: 3'- -AUCUugUaGCUCCGgCGGACCGGgcu -5' |
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3606 | 5' | -59.4 | NC_001650.1 | + | 79075 | 0.7 | 0.548363 |
Target: 5'- gAG-GCGUCG-GGCCccggGCCUGGCuCCGGg -3' miRNA: 3'- aUCuUGUAGCuCCGG----CGGACCG-GGCU- -5' |
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3606 | 5' | -59.4 | NC_001650.1 | + | 59735 | 0.7 | 0.567918 |
Target: 5'- aGGGGCGUCGAggGGCC-CgUGGCCCc- -3' miRNA: 3'- aUCUUGUAGCU--CCGGcGgACCGGGcu -5' |
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3606 | 5' | -59.4 | NC_001650.1 | + | 127043 | 0.7 | 0.567918 |
Target: 5'- aAGAucACGUCGcgauggacgagGGGgCGCCgGGCCCGGg -3' miRNA: 3'- aUCU--UGUAGC-----------UCCgGCGGaCCGGGCU- -5' |
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3606 | 5' | -59.4 | NC_001650.1 | + | 115189 | 0.69 | 0.604507 |
Target: 5'- gAGGACGUCGgaccucacaaagucAGGCCuGCaCaGGCCCGGc -3' miRNA: 3'- aUCUUGUAGC--------------UCCGG-CG-GaCCGGGCU- -5' |
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3606 | 5' | -59.4 | NC_001650.1 | + | 132419 | 0.69 | 0.621428 |
Target: 5'- gAGGAgGUgGAggucuucgggaggcaGGCCGCCUGGCUgGGg -3' miRNA: 3'- aUCUUgUAgCU---------------CCGGCGGACCGGgCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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