miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3606 5' -59.4 NC_001650.1 + 77867 0.66 0.772887
Target:  5'- cAGAGgGUgGAgaaGGCCGCgCUGGUCCu- -3'
miRNA:   3'- aUCUUgUAgCU---CCGGCG-GACCGGGcu -5'
3606 5' -59.4 NC_001650.1 + 160200 0.66 0.80833
Target:  5'- aGGAGCAaaGAGGCCaCUaggUGGCCCc- -3'
miRNA:   3'- aUCUUGUagCUCCGGcGG---ACCGGGcu -5'
3606 5' -59.4 NC_001650.1 + 139569 0.66 0.79088
Target:  5'- cGGGAUuuaaAUCaGGGCCGCCUcgcugguaGGCCCu- -3'
miRNA:   3'- aUCUUG----UAGcUCCGGCGGA--------CCGGGcu -5'
3606 5' -59.4 NC_001650.1 + 173515 0.66 0.79088
Target:  5'- aAGGGCAUUG-GGCaauaaaGCCcaUGGCCCa- -3'
miRNA:   3'- aUCUUGUAGCuCCGg-----CGG--ACCGGGcu -5'
3606 5' -59.4 NC_001650.1 + 169987 0.66 0.781947
Target:  5'- aAGGAUAgccaauggGAGGCCuCCgGGCCCGGc -3'
miRNA:   3'- aUCUUGUag------CUCCGGcGGaCCGGGCU- -5'
3606 5' -59.4 NC_001650.1 + 6921 0.66 0.781947
Target:  5'- gAGGGCAUUG-GGCaauaaaGCCcuUGGCCCa- -3'
miRNA:   3'- aUCUUGUAGCuCCGg-----CGG--ACCGGGcu -5'
3606 5' -59.4 NC_001650.1 + 132042 0.66 0.80833
Target:  5'- gGGuGACGUCGGcGGCCgGCCaccgccccGGCCUGAa -3'
miRNA:   3'- aUC-UUGUAGCU-CCGG-CGGa-------CCGGGCU- -5'
3606 5' -59.4 NC_001650.1 + 3280 0.66 0.781947
Target:  5'- aAGGAUAgccaauggGAGGCCuCCgGGCCCGGc -3'
miRNA:   3'- aUCUUGUag------CUCCGGcGGaCCGGGCU- -5'
3606 5' -59.4 NC_001650.1 + 51029 0.66 0.80833
Target:  5'- -cGcGCGcCGGGGCCGCg-GuGCCCGAg -3'
miRNA:   3'- auCuUGUaGCUCCGGCGgaC-CGGGCU- -5'
3606 5' -59.4 NC_001650.1 + 52777 0.66 0.781947
Target:  5'- aGGGACucgcggCGGcGGCgGCCcucggGGCCCGGg -3'
miRNA:   3'- aUCUUGua----GCU-CCGgCGGa----CCGGGCU- -5'
3606 5' -59.4 NC_001650.1 + 25055 0.66 0.79088
Target:  5'- gGGAGCGaCGuGGCCaGCg-GGCCCGc -3'
miRNA:   3'- aUCUUGUaGCuCCGG-CGgaCCGGGCu -5'
3606 5' -59.4 NC_001650.1 + 130002 0.66 0.799677
Target:  5'- gAGGGCGgcgcgggaCGAGGCCGCg-GGCCUc- -3'
miRNA:   3'- aUCUUGUa-------GCUCCGGCGgaCCGGGcu -5'
3606 5' -59.4 NC_001650.1 + 131037 0.66 0.781947
Target:  5'- cAGGGCGgccgccuccuccUgGAGGaCCGCCaGGUCCGGg -3'
miRNA:   3'- aUCUUGU------------AgCUCC-GGCGGaCCGGGCU- -5'
3606 5' -59.4 NC_001650.1 + 173628 0.66 0.781947
Target:  5'- gAGGGCAUUG-GGCaauaaaGCCcuUGGCCCa- -3'
miRNA:   3'- aUCUUGUAGCuCCGg-----CGG--ACCGGGcu -5'
3606 5' -59.4 NC_001650.1 + 174097 0.67 0.745025
Target:  5'- uUAGGGCAUUG-GGCaauaaaGCCcaUGGCCCa- -3'
miRNA:   3'- -AUCUUGUAGCuCCGg-----CGG--ACCGGGcu -5'
3606 5' -59.4 NC_001650.1 + 27445 0.67 0.735538
Target:  5'- -cGGGCAacUCGGuGCUGuaCCUGGCCCGGg -3'
miRNA:   3'- auCUUGU--AGCUcCGGC--GGACCGGGCU- -5'
3606 5' -59.4 NC_001650.1 + 77943 0.67 0.725967
Target:  5'- aGGAGCGggGGcGGCUGCgaGGCaCCGAg -3'
miRNA:   3'- aUCUUGUagCU-CCGGCGgaCCG-GGCU- -5'
3606 5' -59.4 NC_001650.1 + 125043 0.67 0.725967
Target:  5'- gAGGACGccgggCGGGG-CGCCUcGCCCGGc -3'
miRNA:   3'- aUCUUGUa----GCUCCgGCGGAcCGGGCU- -5'
3606 5' -59.4 NC_001650.1 + 35525 0.67 0.735538
Target:  5'- gUGGAAgGUCaGGGCCacaggcgugugGcCCUGGCCCGc -3'
miRNA:   3'- -AUCUUgUAGcUCCGG-----------C-GGACCGGGCu -5'
3606 5' -59.4 NC_001650.1 + 6301 0.67 0.716318
Target:  5'- gGGAcucgaugcauauGCAUCGGGGCCuugggcaauaaaGCCccgGGCCCa- -3'
miRNA:   3'- aUCU------------UGUAGCUCCGG------------CGGa--CCGGGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.