miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3606 5' -59.4 NC_001650.1 + 25238 1.07 0.002161
Target:  5'- gUAGAACAUCGAGGCCGCCUGGCCCGAg -3'
miRNA:   3'- -AUCUUGUAGCUCCGGCGGACCGGGCU- -5'
3606 5' -59.4 NC_001650.1 + 27061 0.75 0.324952
Target:  5'- -uGAGCAgguaccucuUCGAGGCCcacuacaccaGCCUGGCCCa- -3'
miRNA:   3'- auCUUGU---------AGCUCCGG----------CGGACCGGGcu -5'
3606 5' -59.4 NC_001650.1 + 142693 0.72 0.436871
Target:  5'- cAGcAGC-UCgGAGGCCGCCacgGGCCUGAa -3'
miRNA:   3'- aUC-UUGuAG-CUCCGGCGGa--CCGGGCU- -5'
3606 5' -59.4 NC_001650.1 + 155567 0.72 0.436871
Target:  5'- aUAGAGC-UCGAGGCCaacGCCUccgagcuGCCCGAg -3'
miRNA:   3'- -AUCUUGuAGCUCCGG---CGGAc------CGGGCU- -5'
3606 5' -59.4 NC_001650.1 + 30864 0.72 0.445682
Target:  5'- gAGGAgGagGAcGGCCGCCUGGCCgaGAu -3'
miRNA:   3'- aUCUUgUagCU-CCGGCGGACCGGg-CU- -5'
3606 5' -59.4 NC_001650.1 + 111404 0.71 0.509944
Target:  5'- gGGGGCG-CG-GGCCGCCUgagccgccugGGCCUGAc -3'
miRNA:   3'- aUCUUGUaGCuCCGGCGGA----------CCGGGCU- -5'
3606 5' -59.4 NC_001650.1 + 74537 0.71 0.51945
Target:  5'- --uGGCAggGAGGCCGCCaccgUGGCCCu- -3'
miRNA:   3'- aucUUGUagCUCCGGCGG----ACCGGGcu -5'
3606 5' -59.4 NC_001650.1 + 109757 0.7 0.538665
Target:  5'- gUGGGugAcCGAGGUgGCCUGGCCa-- -3'
miRNA:   3'- -AUCUugUaGCUCCGgCGGACCGGgcu -5'
3606 5' -59.4 NC_001650.1 + 79075 0.7 0.548363
Target:  5'- gAG-GCGUCG-GGCCccggGCCUGGCuCCGGg -3'
miRNA:   3'- aUCuUGUAGCuCCGG----CGGACCG-GGCU- -5'
3606 5' -59.4 NC_001650.1 + 127043 0.7 0.567918
Target:  5'- aAGAucACGUCGcgauggacgagGGGgCGCCgGGCCCGGg -3'
miRNA:   3'- aUCU--UGUAGC-----------UCCgGCGGaCCGGGCU- -5'
3606 5' -59.4 NC_001650.1 + 59735 0.7 0.567918
Target:  5'- aGGGGCGUCGAggGGCC-CgUGGCCCc- -3'
miRNA:   3'- aUCUUGUAGCU--CCGGcGgACCGGGcu -5'
3606 5' -59.4 NC_001650.1 + 59052 0.7 0.567918
Target:  5'- -cGGACGUgGGGGCUcaucuGCCUcucccgGGCCCGAu -3'
miRNA:   3'- auCUUGUAgCUCCGG-----CGGA------CCGGGCU- -5'
3606 5' -59.4 NC_001650.1 + 115189 0.69 0.604507
Target:  5'- gAGGACGUCGgaccucacaaagucAGGCCuGCaCaGGCCCGGc -3'
miRNA:   3'- aUCUUGUAGC--------------UCCGG-CG-GaCCGGGCU- -5'
3606 5' -59.4 NC_001650.1 + 132419 0.69 0.621428
Target:  5'- gAGGAgGUgGAggucuucgggaggcaGGCCGCCUGGCUgGGg -3'
miRNA:   3'- aUCUUgUAgCU---------------CCGGCGGACCGGgCU- -5'
3606 5' -59.4 NC_001650.1 + 53898 0.69 0.637374
Target:  5'- -----gGUCGAGaGCCGgCUGGCCCu- -3'
miRNA:   3'- aucuugUAGCUC-CGGCgGACCGGGcu -5'
3606 5' -59.4 NC_001650.1 + 52868 0.68 0.656294
Target:  5'- cUGGGGCGauuccgcUCGAGGCUcacgGUCUGGCgCGAg -3'
miRNA:   3'- -AUCUUGU-------AGCUCCGG----CGGACCGgGCU- -5'
3606 5' -59.4 NC_001650.1 + 86240 0.68 0.677127
Target:  5'- gAGGGCGaCGAGGCCaCCgaGGCCUGc -3'
miRNA:   3'- aUCUUGUaGCUCCGGcGGa-CCGGGCu -5'
3606 5' -59.4 NC_001650.1 + 52603 0.68 0.686998
Target:  5'- gGGAGCucugggAUgGGGGCCa-CUGGCCCGGg -3'
miRNA:   3'- aUCUUG------UAgCUCCGGcgGACCGGGCU- -5'
3606 5' -59.4 NC_001650.1 + 136628 0.68 0.686998
Target:  5'- gGGGGCGUCGGGG-CGCCcugaGGCuCCGc -3'
miRNA:   3'- aUCUUGUAGCUCCgGCGGa---CCG-GGCu -5'
3606 5' -59.4 NC_001650.1 + 173763 0.68 0.705627
Target:  5'- uUAGGGCAUgGGGcaauaaaGCCcCCUGGCCCa- -3'
miRNA:   3'- -AUCUUGUAgCUC-------CGGcGGACCGGGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.