miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3607 3' -45.9 NC_001650.1 + 25887 1.08 0.033398
Target:  5'- uCUUUAAGAGGUUAGUCAAGGACAGCUu -3'
miRNA:   3'- -GAAAUUCUCCAAUCAGUUCCUGUCGA- -5'
3607 3' -45.9 NC_001650.1 + 98846 0.78 0.875432
Target:  5'- ---cAGGAGGUcAG-CAGGGACAGCUc -3'
miRNA:   3'- gaaaUUCUCCAaUCaGUUCCUGUCGA- -5'
3607 3' -45.9 NC_001650.1 + 110967 0.74 0.979691
Target:  5'- --aUAGGAGGggAGaCGAGGACAGg- -3'
miRNA:   3'- gaaAUUCUCCaaUCaGUUCCUGUCga -5'
3607 3' -45.9 NC_001650.1 + 15305 0.73 0.984016
Target:  5'- ---aGAGAGG-UGGagAGGGGCGGCUg -3'
miRNA:   3'- gaaaUUCUCCaAUCagUUCCUGUCGA- -5'
3607 3' -45.9 NC_001650.1 + 182012 0.73 0.984016
Target:  5'- ---aGAGAGG-UGGagAGGGGCGGCUg -3'
miRNA:   3'- gaaaUUCUCCaAUCagUUCCUGUCGA- -5'
3607 3' -45.9 NC_001650.1 + 129221 0.73 0.989148
Target:  5'- ----uGGAGGggGGUCGAGGGgaAGCUg -3'
miRNA:   3'- gaaauUCUCCaaUCAGUUCCUg-UCGA- -5'
3607 3' -45.9 NC_001650.1 + 130709 0.72 0.992894
Target:  5'- ---aGGGAGGcgGGgcaCAGGGGCAGCa -3'
miRNA:   3'- gaaaUUCUCCaaUCa--GUUCCUGUCGa -5'
3607 3' -45.9 NC_001650.1 + 80922 0.72 0.994757
Target:  5'- ---cGAGuGGau-GUCAGGGACGGCa -3'
miRNA:   3'- gaaaUUCuCCaauCAGUUCCUGUCGa -5'
3607 3' -45.9 NC_001650.1 + 49473 0.71 0.996793
Target:  5'- --aUAGuGAGGUUGugcGUCAAGGAguGCa -3'
miRNA:   3'- gaaAUU-CUCCAAU---CAGUUCCUguCGa -5'
3607 3' -45.9 NC_001650.1 + 111980 0.71 0.997305
Target:  5'- -----uGAGGgaGGUUAAGGugGGCa -3'
miRNA:   3'- gaaauuCUCCaaUCAGUUCCugUCGa -5'
3607 3' -45.9 NC_001650.1 + 126482 0.7 0.998451
Target:  5'- ----cGGGGGUccGUCGAGGACGGg- -3'
miRNA:   3'- gaaauUCUCCAauCAGUUCCUGUCga -5'
3607 3' -45.9 NC_001650.1 + 156191 0.69 0.999318
Target:  5'- ---cAGGGGGgcucggUGGuguUCAGGGACAGCc -3'
miRNA:   3'- gaaaUUCUCCa-----AUC---AGUUCCUGUCGa -5'
3607 3' -45.9 NC_001650.1 + 142181 0.69 0.999655
Target:  5'- ----uAGAGGUaaaagauagGGUCGAGGGCAGaCg -3'
miRNA:   3'- gaaauUCUCCAa--------UCAGUUCCUGUC-Ga -5'
3607 3' -45.9 NC_001650.1 + 130400 0.68 0.999789
Target:  5'- gCUUccuGGAGGgcaucGUCAGGGACAaGCa -3'
miRNA:   3'- -GAAau-UCUCCaau--CAGUUCCUGU-CGa -5'
3607 3' -45.9 NC_001650.1 + 123524 0.68 0.999789
Target:  5'- ---gGAGGGGUgccccUCAAGGACAGg- -3'
miRNA:   3'- gaaaUUCUCCAauc--AGUUCCUGUCga -5'
3607 3' -45.9 NC_001650.1 + 77921 0.68 0.999809
Target:  5'- ---aGGGAGGUggucuucaaacaggAGgagCGGGGGCGGCUg -3'
miRNA:   3'- gaaaUUCUCCAa-------------UCa--GUUCCUGUCGA- -5'
3607 3' -45.9 NC_001650.1 + 118010 0.68 0.999836
Target:  5'- ---cGAGGGGgagGGUgCcGGGGCAGCg -3'
miRNA:   3'- gaaaUUCUCCaa-UCA-GuUCCUGUCGa -5'
3607 3' -45.9 NC_001650.1 + 80158 0.68 0.999836
Target:  5'- --gUGGGAGGg----CGAGGGCGGCc -3'
miRNA:   3'- gaaAUUCUCCaaucaGUUCCUGUCGa -5'
3607 3' -45.9 NC_001650.1 + 87900 0.68 0.999874
Target:  5'- ---gAGGAGGgagacgGG-CGAGGGCGGCc -3'
miRNA:   3'- gaaaUUCUCCaa----UCaGUUCCUGUCGa -5'
3607 3' -45.9 NC_001650.1 + 91842 0.68 0.999874
Target:  5'- ---cAAGAGGcUGGgCGAGGuCAGCa -3'
miRNA:   3'- gaaaUUCUCCaAUCaGUUCCuGUCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.