miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3607 3' -45.9 NC_001650.1 + 60181 0.67 0.99997
Target:  5'- ---gAGGAGGccggGGUCugcGGGCGGCg -3'
miRNA:   3'- gaaaUUCUCCaa--UCAGuu-CCUGUCGa -5'
3607 3' -45.9 NC_001650.1 + 80158 0.68 0.999836
Target:  5'- --gUGGGAGGg----CGAGGGCGGCc -3'
miRNA:   3'- gaaAUUCUCCaaucaGUUCCUGUCGa -5'
3607 3' -45.9 NC_001650.1 + 15531 0.67 0.999904
Target:  5'- ---gGAGAGGggAG--GAGGugGGCUg -3'
miRNA:   3'- gaaaUUCUCCaaUCagUUCCugUCGA- -5'
3607 3' -45.9 NC_001650.1 + 182238 0.67 0.999904
Target:  5'- ---gGAGAGGggAG--GAGGugGGCUg -3'
miRNA:   3'- gaaaUUCUCCaaUCagUUCCugUCGA- -5'
3607 3' -45.9 NC_001650.1 + 128291 0.67 0.999928
Target:  5'- ---gGAGAGccagccGggGGUCAAGGACAGg- -3'
miRNA:   3'- gaaaUUCUC------CaaUCAGUUCCUGUCga -5'
3607 3' -45.9 NC_001650.1 + 56266 0.67 0.999928
Target:  5'- ---gAGGGGGUUGGgcgAAGGACGGg- -3'
miRNA:   3'- gaaaUUCUCCAAUCag-UUCCUGUCga -5'
3607 3' -45.9 NC_001650.1 + 165535 0.67 0.999946
Target:  5'- ---cAAGAGGgcuGUUGAgcGGGCAGCUg -3'
miRNA:   3'- gaaaUUCUCCaauCAGUU--CCUGUCGA- -5'
3607 3' -45.9 NC_001650.1 + 50041 0.67 0.999959
Target:  5'- --cUGAGGGGgcuuugGGUCAacagcaaAGGAgAGCUa -3'
miRNA:   3'- gaaAUUCUCCaa----UCAGU-------UCCUgUCGA- -5'
3607 3' -45.9 NC_001650.1 + 75231 0.67 0.99996
Target:  5'- ---cAGGAGG-UGGUCcacAGGGACGGgCUg -3'
miRNA:   3'- gaaaUUCUCCaAUCAG---UUCCUGUC-GA- -5'
3607 3' -45.9 NC_001650.1 + 77921 0.68 0.999809
Target:  5'- ---aGGGAGGUggucuucaaacaggAGgagCGGGGGCGGCUg -3'
miRNA:   3'- gaaaUUCUCCAa-------------UCa--GUUCCUGUCGA- -5'
3607 3' -45.9 NC_001650.1 + 130400 0.68 0.999789
Target:  5'- gCUUccuGGAGGgcaucGUCAGGGACAaGCa -3'
miRNA:   3'- -GAAau-UCUCCaau--CAGUUCCUGU-CGa -5'
3607 3' -45.9 NC_001650.1 + 123524 0.68 0.999789
Target:  5'- ---gGAGGGGUgccccUCAAGGACAGg- -3'
miRNA:   3'- gaaaUUCUCCAauc--AGUUCCUGUCga -5'
3607 3' -45.9 NC_001650.1 + 110967 0.74 0.979691
Target:  5'- --aUAGGAGGggAGaCGAGGACAGg- -3'
miRNA:   3'- gaaAUUCUCCaaUCaGUUCCUGUCga -5'
3607 3' -45.9 NC_001650.1 + 15305 0.73 0.984016
Target:  5'- ---aGAGAGG-UGGagAGGGGCGGCUg -3'
miRNA:   3'- gaaaUUCUCCaAUCagUUCCUGUCGA- -5'
3607 3' -45.9 NC_001650.1 + 182012 0.73 0.984016
Target:  5'- ---aGAGAGG-UGGagAGGGGCGGCUg -3'
miRNA:   3'- gaaaUUCUCCaAUCagUUCCUGUCGA- -5'
3607 3' -45.9 NC_001650.1 + 129221 0.73 0.989148
Target:  5'- ----uGGAGGggGGUCGAGGGgaAGCUg -3'
miRNA:   3'- gaaauUCUCCaaUCAGUUCCUg-UCGA- -5'
3607 3' -45.9 NC_001650.1 + 80922 0.72 0.994757
Target:  5'- ---cGAGuGGau-GUCAGGGACGGCa -3'
miRNA:   3'- gaaaUUCuCCaauCAGUUCCUGUCGa -5'
3607 3' -45.9 NC_001650.1 + 49473 0.71 0.996793
Target:  5'- --aUAGuGAGGUUGugcGUCAAGGAguGCa -3'
miRNA:   3'- gaaAUU-CUCCAAU---CAGUUCCUguCGa -5'
3607 3' -45.9 NC_001650.1 + 111980 0.71 0.997305
Target:  5'- -----uGAGGgaGGUUAAGGugGGCa -3'
miRNA:   3'- gaaauuCUCCaaUCAGUUCCugUCGa -5'
3607 3' -45.9 NC_001650.1 + 126482 0.7 0.998451
Target:  5'- ----cGGGGGUccGUCGAGGACGGg- -3'
miRNA:   3'- gaaauUCUCCAauCAGUUCCUGUCga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.