miRNA display CGI


Results 21 - 40 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3608 3' -60.2 NC_001650.1 + 45101 0.69 0.596835
Target:  5'- aGCgGgCugCGGCUugcGGCCGCGGUuccCAGg -3'
miRNA:   3'- -UGgUgGugGUCGA---CCGGCGCCAu--GUC- -5'
3608 3' -60.2 NC_001650.1 + 45423 0.66 0.771083
Target:  5'- uGCCGCCACgGcGCUgGGCUaGUGG-GCAGg -3'
miRNA:   3'- -UGGUGGUGgU-CGA-CCGG-CGCCaUGUC- -5'
3608 3' -60.2 NC_001650.1 + 48364 0.69 0.586994
Target:  5'- cACCACCGCCcagaagauguaGGUgcagaUGGCCGCGGggguCAu -3'
miRNA:   3'- -UGGUGGUGG-----------UCG-----ACCGGCGCCau--GUc -5'
3608 3' -60.2 NC_001650.1 + 48498 0.7 0.50985
Target:  5'- aACUugGCCACCAGCuUGGCCcuGUGGgcUAGg -3'
miRNA:   3'- -UGG--UGGUGGUCG-ACCGG--CGCCauGUC- -5'
3608 3' -60.2 NC_001650.1 + 50758 0.66 0.780105
Target:  5'- cGCCGCCACCAcCUGcUCGCaGG-ACGGg -3'
miRNA:   3'- -UGGUGGUGGUcGACcGGCG-CCaUGUC- -5'
3608 3' -60.2 NC_001650.1 + 51042 0.72 0.395035
Target:  5'- aGCuCGCCGCCcucgcGCgccggGGCCGCGGUGCc- -3'
miRNA:   3'- -UG-GUGGUGGu----CGa----CCGGCGCCAUGuc -5'
3608 3' -60.2 NC_001650.1 + 51302 0.69 0.586994
Target:  5'- cCCAgCACCAGg-GGCUGaacaGGUACGGg -3'
miRNA:   3'- uGGUgGUGGUCgaCCGGCg---CCAUGUC- -5'
3608 3' -60.2 NC_001650.1 + 57520 0.67 0.714809
Target:  5'- --uGCCACCGGCgcuacGGCCGCuaauguGGaGCAGa -3'
miRNA:   3'- uggUGGUGGUCGa----CCGGCG------CCaUGUC- -5'
3608 3' -60.2 NC_001650.1 + 58668 0.69 0.586994
Target:  5'- uCCGCCcugguccucGCCAcGCUGGaCGCGGcGCAGa -3'
miRNA:   3'- uGGUGG---------UGGU-CGACCgGCGCCaUGUC- -5'
3608 3' -60.2 NC_001650.1 + 58742 0.71 0.446025
Target:  5'- gACCGCCACgCAGaacaGGCCGUagcgcgugaGGUGCAGc -3'
miRNA:   3'- -UGGUGGUG-GUCga--CCGGCG---------CCAUGUC- -5'
3608 3' -60.2 NC_001650.1 + 60117 0.7 0.538367
Target:  5'- cCCGCCGCCcGCggaGGCCGCGuccGCGGu -3'
miRNA:   3'- uGGUGGUGGuCGa--CCGGCGCca-UGUC- -5'
3608 3' -60.2 NC_001650.1 + 60267 0.71 0.446025
Target:  5'- cAUgGCCGCCGGCUgcugcggcugaGGCCGCuGGgcgGCGGg -3'
miRNA:   3'- -UGgUGGUGGUCGA-----------CCGGCG-CCa--UGUC- -5'
3608 3' -60.2 NC_001650.1 + 60645 0.68 0.656154
Target:  5'- gGCCACCGucuCCAGCUGcCUGgGGUugGa -3'
miRNA:   3'- -UGGUGGU---GGUCGACcGGCgCCAugUc -5'
3608 3' -60.2 NC_001650.1 + 61452 0.7 0.538367
Target:  5'- gGCCACCGCCcuCcacgUGGCCGgGG-ACGGg -3'
miRNA:   3'- -UGGUGGUGGucG----ACCGGCgCCaUGUC- -5'
3608 3' -60.2 NC_001650.1 + 66438 0.81 0.119644
Target:  5'- cGCCGCCACCGGCUuggagaagggGGCCGCGcagACAGa -3'
miRNA:   3'- -UGGUGGUGGUCGA----------CCGGCGCca-UGUC- -5'
3608 3' -60.2 NC_001650.1 + 72927 0.69 0.6067
Target:  5'- uGCC-CCACCAGCuUGGCCcucucGUGGgugGCGa -3'
miRNA:   3'- -UGGuGGUGGUCG-ACCGG-----CGCCa--UGUc -5'
3608 3' -60.2 NC_001650.1 + 73244 0.68 0.625487
Target:  5'- uCCACCACgAGCUGGCCacccucaacaccaGCcugGGcUACAGc -3'
miRNA:   3'- uGGUGGUGgUCGACCGG-------------CG---CC-AUGUC- -5'
3608 3' -60.2 NC_001650.1 + 73719 0.66 0.780105
Target:  5'- gAUCACCucgcaggugGCgAGCUGGCCGUGGc---- -3'
miRNA:   3'- -UGGUGG---------UGgUCGACCGGCGCCauguc -5'
3608 3' -60.2 NC_001650.1 + 73884 0.69 0.55768
Target:  5'- cCCGCCACCAGC-GGCa-CGGaccUGCAGu -3'
miRNA:   3'- uGGUGGUGGUCGaCCGgcGCC---AUGUC- -5'
3608 3' -60.2 NC_001650.1 + 75392 0.66 0.73392
Target:  5'- gUCACCuuCAGgauguuccucaUGGCCGCGGUugGGu -3'
miRNA:   3'- uGGUGGugGUCg----------ACCGGCGCCAugUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.