miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3608 3' -60.2 NC_001650.1 + 499 0.67 0.70515
Target:  5'- uAUCGCCucgGCCGGCaggGGgCGCuGUGCAGg -3'
miRNA:   3'- -UGGUGG---UGGUCGa--CCgGCGcCAUGUC- -5'
3608 3' -60.2 NC_001650.1 + 11237 0.69 0.6067
Target:  5'- uGCCACgC-CCGGCUGccGCUGCGGcgACGGc -3'
miRNA:   3'- -UGGUG-GuGGUCGAC--CGGCGCCa-UGUC- -5'
3608 3' -60.2 NC_001650.1 + 15574 0.68 0.660103
Target:  5'- gGCCGCUcgGCUGGUuggugggugggugggUGGuuGUGGUGCAGa -3'
miRNA:   3'- -UGGUGG--UGGUCG---------------ACCggCGCCAUGUC- -5'
3608 3' -60.2 NC_001650.1 + 21527 0.71 0.481984
Target:  5'- gGCUACUGCUGGgagGGCCGCGGcUGCGGu -3'
miRNA:   3'- -UGGUGGUGGUCga-CCGGCGCC-AUGUC- -5'
3608 3' -60.2 NC_001650.1 + 22776 0.66 0.761946
Target:  5'- uGCaCGCCAagaUAGC-GGCCGC-GUGCGGg -3'
miRNA:   3'- -UG-GUGGUg--GUCGaCCGGCGcCAUGUC- -5'
3608 3' -60.2 NC_001650.1 + 22885 0.67 0.724401
Target:  5'- gGCCGCCaggauggagGCCAGCcgccGGCCGCugucGUGCGa -3'
miRNA:   3'- -UGGUGG---------UGGUCGa---CCGGCGc---CAUGUc -5'
3608 3' -60.2 NC_001650.1 + 23575 0.68 0.665035
Target:  5'- gACCACCACCauagaguAGUcGGCCaCGG-GCAGg -3'
miRNA:   3'- -UGGUGGUGG-------UCGaCCGGcGCCaUGUC- -5'
3608 3' -60.2 NC_001650.1 + 24236 0.66 0.7527
Target:  5'- uGCCccgagACgGCCAGCcucuUGGCCcucaGGUGCAGg -3'
miRNA:   3'- -UGG-----UGgUGGUCG----ACCGGcg--CCAUGUC- -5'
3608 3' -60.2 NC_001650.1 + 25384 0.68 0.616583
Target:  5'- gGCCACUGCCagagguaguAGCUGGCggugauauCGUGGaGCAGg -3'
miRNA:   3'- -UGGUGGUGG---------UCGACCG--------GCGCCaUGUC- -5'
3608 3' -60.2 NC_001650.1 + 26914 0.81 0.125824
Target:  5'- uACCGCgGCCAGCUGGUgGUGGUAgAGu -3'
miRNA:   3'- -UGGUGgUGGUCGACCGgCGCCAUgUC- -5'
3608 3' -60.2 NC_001650.1 + 27072 0.69 0.577184
Target:  5'- cACCACCACCcccgcuauguGGCUcucGGCCcCGGgcaGCAGg -3'
miRNA:   3'- -UGGUGGUGG----------UCGA---CCGGcGCCa--UGUC- -5'
3608 3' -60.2 NC_001650.1 + 27120 1.07 0.001966
Target:  5'- uACCACCACCAGCUGGCCGCGGUACAGc -3'
miRNA:   3'- -UGGUGGUGGUCGACCGGCGCCAUGUC- -5'
3608 3' -60.2 NC_001650.1 + 27263 0.66 0.761946
Target:  5'- gGCCACgG--AGCUGGCCGUGaGcUACGGc -3'
miRNA:   3'- -UGGUGgUggUCGACCGGCGC-C-AUGUC- -5'
3608 3' -60.2 NC_001650.1 + 27974 0.69 0.6067
Target:  5'- -gCACauggGCguGUUGGCCGCGGUGCc- -3'
miRNA:   3'- ugGUGg---UGguCGACCGGCGCCAUGuc -5'
3608 3' -60.2 NC_001650.1 + 28280 0.75 0.298296
Target:  5'- aACCugUACUAcaggugcguGCUGGCgGUGGUGCAGg -3'
miRNA:   3'- -UGGugGUGGU---------CGACCGgCGCCAUGUC- -5'
3608 3' -60.2 NC_001650.1 + 28496 0.68 0.616583
Target:  5'- cACCACCGCCAGCacGCaccuGUaGUACAGg -3'
miRNA:   3'- -UGGUGGUGGUCGacCGg---CGcCAUGUC- -5'
3608 3' -60.2 NC_001650.1 + 30876 0.7 0.542212
Target:  5'- gGCCGCCuggccgagaucuccaACCugguauacuggAGCUcGGCCGCGG-ACAGg -3'
miRNA:   3'- -UGGUGG---------------UGG-----------UCGA-CCGGCGCCaUGUC- -5'
3608 3' -60.2 NC_001650.1 + 36980 0.66 0.780105
Target:  5'- uCCACCACCAGCa--CCGgGGUGuugUAGa -3'
miRNA:   3'- uGGUGGUGGUCGaccGGCgCCAU---GUC- -5'
3608 3' -60.2 NC_001650.1 + 37007 0.67 0.724401
Target:  5'- gGCCAUCaggcGCgAGCUGGCCaCGGUcuCGGa -3'
miRNA:   3'- -UGGUGG----UGgUCGACCGGcGCCAu-GUC- -5'
3608 3' -60.2 NC_001650.1 + 43963 0.68 0.646269
Target:  5'- aGCCGcuaucuCCACCuGCUGGUgaauaCGUGGUugGGa -3'
miRNA:   3'- -UGGU------GGUGGuCGACCG-----GCGCCAugUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.