miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3608 3' -60.2 NC_001650.1 + 27120 1.07 0.001966
Target:  5'- uACCACCACCAGCUGGCCGCGGUACAGc -3'
miRNA:   3'- -UGGUGGUGGUCGACCGGCGCCAUGUC- -5'
3608 3' -60.2 NC_001650.1 + 66438 0.81 0.119644
Target:  5'- cGCCGCCACCGGCUuggagaagggGGCCGCGcagACAGa -3'
miRNA:   3'- -UGGUGGUGGUCGA----------CCGGCGCca-UGUC- -5'
3608 3' -60.2 NC_001650.1 + 26914 0.81 0.125824
Target:  5'- uACCGCgGCCAGCUGGUgGUGGUAgAGu -3'
miRNA:   3'- -UGGUGgUGGUCGACCGgCGCCAUgUC- -5'
3608 3' -60.2 NC_001650.1 + 130305 0.78 0.173689
Target:  5'- gGCCAaCGCCAgGCUGGCCGCGGU-CAu -3'
miRNA:   3'- -UGGUgGUGGU-CGACCGGCGCCAuGUc -5'
3608 3' -60.2 NC_001650.1 + 28280 0.75 0.298296
Target:  5'- aACCugUACUAcaggugcguGCUGGCgGUGGUGCAGg -3'
miRNA:   3'- -UGGugGUGGU---------CGACCGgCGCCAUGUC- -5'
3608 3' -60.2 NC_001650.1 + 117313 0.74 0.311905
Target:  5'- uGCCcCCGCCc-CUGGCCGCGaaGUACAGg -3'
miRNA:   3'- -UGGuGGUGGucGACCGGCGC--CAUGUC- -5'
3608 3' -60.2 NC_001650.1 + 102457 0.73 0.347967
Target:  5'- cACCugCGCCGGCUGcGCCGUcuGGUgggagGCGGc -3'
miRNA:   3'- -UGGugGUGGUCGAC-CGGCG--CCA-----UGUC- -5'
3608 3' -60.2 NC_001650.1 + 131841 0.73 0.363202
Target:  5'- gGCgGCCGCCAGCUcgGGCCG-GGUggccaGCAGc -3'
miRNA:   3'- -UGgUGGUGGUCGA--CCGGCgCCA-----UGUC- -5'
3608 3' -60.2 NC_001650.1 + 51042 0.72 0.395035
Target:  5'- aGCuCGCCGCCcucgcGCgccggGGCCGCGGUGCc- -3'
miRNA:   3'- -UG-GUGGUGGu----CGa----CCGGCGCCAUGuc -5'
3608 3' -60.2 NC_001650.1 + 122512 0.72 0.427755
Target:  5'- cGCgGCgGCCAGCUGcucgcgcGCCGCGGgggcgUGCAGg -3'
miRNA:   3'- -UGgUGgUGGUCGAC-------CGGCGCC-----AUGUC- -5'
3608 3' -60.2 NC_001650.1 + 58742 0.71 0.446025
Target:  5'- gACCGCCACgCAGaacaGGCCGUagcgcgugaGGUGCAGc -3'
miRNA:   3'- -UGGUGGUG-GUCga--CCGGCG---------CCAUGUC- -5'
3608 3' -60.2 NC_001650.1 + 133082 0.71 0.446025
Target:  5'- aGCCGCgGCCGGC-GGCgaGCcaGGUGCAGg -3'
miRNA:   3'- -UGGUGgUGGUCGaCCGg-CG--CCAUGUC- -5'
3608 3' -60.2 NC_001650.1 + 60267 0.71 0.446025
Target:  5'- cAUgGCCGCCGGCUgcugcggcugaGGCCGCuGGgcgGCGGg -3'
miRNA:   3'- -UGgUGGUGGUCGA-----------CCGGCG-CCa--UGUC- -5'
3608 3' -60.2 NC_001650.1 + 80970 0.71 0.446025
Target:  5'- cACCGgCACCAGCUccuucuccagGGCCGCgcaggaaagGGUGCAc -3'
miRNA:   3'- -UGGUgGUGGUCGA----------CCGGCG---------CCAUGUc -5'
3608 3' -60.2 NC_001650.1 + 164800 0.71 0.481984
Target:  5'- aGCUcucaGCCGCCGGC-GGCCGCGa-GCAGa -3'
miRNA:   3'- -UGG----UGGUGGUCGaCCGGCGCcaUGUC- -5'
3608 3' -60.2 NC_001650.1 + 21527 0.71 0.481984
Target:  5'- gGCUACUGCUGGgagGGCCGCGGcUGCGGu -3'
miRNA:   3'- -UGGUGGUGGUCga-CCGGCGCC-AUGUC- -5'
3608 3' -60.2 NC_001650.1 + 121400 0.7 0.507032
Target:  5'- cACCGuCCGCCGGgcgcacccguagguCUGGUCGUGGaGCAGg -3'
miRNA:   3'- -UGGU-GGUGGUC--------------GACCGGCGCCaUGUC- -5'
3608 3' -60.2 NC_001650.1 + 48498 0.7 0.50985
Target:  5'- aACUugGCCACCAGCuUGGCCcuGUGGgcUAGg -3'
miRNA:   3'- -UGG--UGGUGGUCG-ACCGG--CGCCauGUC- -5'
3608 3' -60.2 NC_001650.1 + 61452 0.7 0.538367
Target:  5'- gGCCACCGCCcuCcacgUGGCCGgGG-ACGGg -3'
miRNA:   3'- -UGGUGGUGGucG----ACCGGCgCCaUGUC- -5'
3608 3' -60.2 NC_001650.1 + 60117 0.7 0.538367
Target:  5'- cCCGCCGCCcGCggaGGCCGCGuccGCGGu -3'
miRNA:   3'- uGGUGGUGGuCGa--CCGGCGCca-UGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.