miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3608 3' -60.2 NC_001650.1 + 131542 0.68 0.646269
Target:  5'- gUgGCCGCCcgggGGCUGGaCGCGGgGCGGa -3'
miRNA:   3'- uGgUGGUGG----UCGACCgGCGCCaUGUC- -5'
3608 3' -60.2 NC_001650.1 + 58668 0.69 0.586994
Target:  5'- uCCGCCcugguccucGCCAcGCUGGaCGCGGcGCAGa -3'
miRNA:   3'- uGGUGG---------UGGU-CGACCgGCGCCaUGUC- -5'
3608 3' -60.2 NC_001650.1 + 45101 0.69 0.596835
Target:  5'- aGCgGgCugCGGCUugcGGCCGCGGUuccCAGg -3'
miRNA:   3'- -UGgUgGugGUCGA---CCGGCGCCAu--GUC- -5'
3608 3' -60.2 NC_001650.1 + 11237 0.69 0.6067
Target:  5'- uGCCACgC-CCGGCUGccGCUGCGGcgACGGc -3'
miRNA:   3'- -UGGUG-GuGGUCGAC--CGGCGCCa-UGUC- -5'
3608 3' -60.2 NC_001650.1 + 177944 0.69 0.6067
Target:  5'- uGCCACgC-CCGGCUGccGCUGCGGcgACGGc -3'
miRNA:   3'- -UGGUG-GuGGUCGAC--CGGCGCCa-UGUC- -5'
3608 3' -60.2 NC_001650.1 + 123819 0.68 0.616583
Target:  5'- cGCCAUgGCC--CUGGCCGUGGUGaucaAGg -3'
miRNA:   3'- -UGGUGgUGGucGACCGGCGCCAUg---UC- -5'
3608 3' -60.2 NC_001650.1 + 155101 0.68 0.616583
Target:  5'- cCCGCCACCguGGagacGGCCGUGGgguUGCGGg -3'
miRNA:   3'- uGGUGGUGG--UCga--CCGGCGCC---AUGUC- -5'
3608 3' -60.2 NC_001650.1 + 73244 0.68 0.625487
Target:  5'- uCCACCACgAGCUGGCCacccucaacaccaGCcugGGcUACAGc -3'
miRNA:   3'- uGGUGGUGgUCGACCGG-------------CG---CC-AUGUC- -5'
3608 3' -60.2 NC_001650.1 + 132021 0.68 0.626477
Target:  5'- cCCugCACCugcucuacgcGCUGGCCGCGGc---- -3'
miRNA:   3'- uGGugGUGGu---------CGACCGGCGCCauguc -5'
3608 3' -60.2 NC_001650.1 + 73884 0.69 0.55768
Target:  5'- cCCGCCACCAGC-GGCa-CGGaccUGCAGu -3'
miRNA:   3'- uGGUGGUGGUCGaCCGgcGCC---AUGUC- -5'
3608 3' -60.2 NC_001650.1 + 30876 0.7 0.542212
Target:  5'- gGCCGCCuggccgagaucuccaACCugguauacuggAGCUcGGCCGCGG-ACAGg -3'
miRNA:   3'- -UGGUGG---------------UGG-----------UCGA-CCGGCGCCaUGUC- -5'
3608 3' -60.2 NC_001650.1 + 60117 0.7 0.538367
Target:  5'- cCCGCCGCCcGCggaGGCCGCGuccGCGGu -3'
miRNA:   3'- uGGUGGUGGuCGa--CCGGCGCca-UGUC- -5'
3608 3' -60.2 NC_001650.1 + 26914 0.81 0.125824
Target:  5'- uACCGCgGCCAGCUGGUgGUGGUAgAGu -3'
miRNA:   3'- -UGGUGgUGGUCGACCGgCGCCAUgUC- -5'
3608 3' -60.2 NC_001650.1 + 130305 0.78 0.173689
Target:  5'- gGCCAaCGCCAgGCUGGCCGCGGU-CAu -3'
miRNA:   3'- -UGGUgGUGGU-CGACCGGCGCCAuGUc -5'
3608 3' -60.2 NC_001650.1 + 28280 0.75 0.298296
Target:  5'- aACCugUACUAcaggugcguGCUGGCgGUGGUGCAGg -3'
miRNA:   3'- -UGGugGUGGU---------CGACCGgCGCCAUGUC- -5'
3608 3' -60.2 NC_001650.1 + 58742 0.71 0.446025
Target:  5'- gACCGCCACgCAGaacaGGCCGUagcgcgugaGGUGCAGc -3'
miRNA:   3'- -UGGUGGUG-GUCga--CCGGCG---------CCAUGUC- -5'
3608 3' -60.2 NC_001650.1 + 60267 0.71 0.446025
Target:  5'- cAUgGCCGCCGGCUgcugcggcugaGGCCGCuGGgcgGCGGg -3'
miRNA:   3'- -UGgUGGUGGUCGA-----------CCGGCG-CCa--UGUC- -5'
3608 3' -60.2 NC_001650.1 + 133082 0.71 0.446025
Target:  5'- aGCCGCgGCCGGC-GGCgaGCcaGGUGCAGg -3'
miRNA:   3'- -UGGUGgUGGUCGaCCGg-CG--CCAUGUC- -5'
3608 3' -60.2 NC_001650.1 + 21527 0.71 0.481984
Target:  5'- gGCUACUGCUGGgagGGCCGCGGcUGCGGu -3'
miRNA:   3'- -UGGUGGUGGUCga-CCGGCGCC-AUGUC- -5'
3608 3' -60.2 NC_001650.1 + 164800 0.71 0.481984
Target:  5'- aGCUcucaGCCGCCGGC-GGCCGCGa-GCAGa -3'
miRNA:   3'- -UGG----UGGUGGUCGaCCGGCGCcaUGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.