miRNA display CGI


Results 21 - 40 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3608 5' -58.4 NC_001650.1 + 82298 0.66 0.869259
Target:  5'- -cCCGcUCGCCccacCCGCCCCCGUUc--- -3'
miRNA:   3'- gaGGC-AGUGGu---GGUGGGGGCGAuaca -5'
3608 5' -58.4 NC_001650.1 + 82922 0.67 0.822727
Target:  5'- --gCGUCAuCCACCGCCCCUaGCUu--- -3'
miRNA:   3'- gagGCAGU-GGUGGUGGGGG-CGAuaca -5'
3608 5' -58.4 NC_001650.1 + 88606 0.7 0.625045
Target:  5'- -cCCGcCGCCACCACCCCCu------ -3'
miRNA:   3'- gaGGCaGUGGUGGUGGGGGcgauaca -5'
3608 5' -58.4 NC_001650.1 + 88729 0.66 0.838963
Target:  5'- uUCCaGagACCGgCGCCCCCGCUu--- -3'
miRNA:   3'- gAGG-CagUGGUgGUGGGGGCGAuaca -5'
3608 5' -58.4 NC_001650.1 + 88836 0.68 0.750926
Target:  5'- -cCCGUCGCCGCCggggcaggaguagACCCCC-CUGg-- -3'
miRNA:   3'- gaGGCAGUGGUGG-------------UGGGGGcGAUaca -5'
3608 5' -58.4 NC_001650.1 + 89600 0.72 0.536617
Target:  5'- -cCCGUCuCCACCACCCgCGCg---- -3'
miRNA:   3'- gaGGCAGuGGUGGUGGGgGCGauaca -5'
3608 5' -58.4 NC_001650.1 + 91367 0.67 0.822727
Target:  5'- cCUCCGcagCAuCCGCagcaGCCCCCGCg---- -3'
miRNA:   3'- -GAGGCa--GU-GGUGg---UGGGGGCGauaca -5'
3608 5' -58.4 NC_001650.1 + 95803 0.75 0.353473
Target:  5'- gCUgCGUCGCCAUCGCUCUCGCUGUc- -3'
miRNA:   3'- -GAgGCAGUGGUGGUGGGGGCGAUAca -5'
3608 5' -58.4 NC_001650.1 + 98637 0.68 0.761154
Target:  5'- -cCCGUC-CC-CCGCCCCUGCa---- -3'
miRNA:   3'- gaGGCAGuGGuGGUGGGGGCGauaca -5'
3608 5' -58.4 NC_001650.1 + 102974 0.69 0.713778
Target:  5'- -gCCGgCGCCGCCuccucCCCCUGCUGaUGUu -3'
miRNA:   3'- gaGGCaGUGGUGGu----GGGGGCGAU-ACA- -5'
3608 5' -58.4 NC_001650.1 + 106334 0.74 0.418052
Target:  5'- --aCGUcCACCACCACCCCCcUUGUGg -3'
miRNA:   3'- gagGCA-GUGGUGGUGGGGGcGAUACa -5'
3608 5' -58.4 NC_001650.1 + 108300 0.7 0.664759
Target:  5'- -aCCGUggucaGCUGCCGCCCCCGCg---- -3'
miRNA:   3'- gaGGCAg----UGGUGGUGGGGGCGauaca -5'
3608 5' -58.4 NC_001650.1 + 111307 0.68 0.742468
Target:  5'- --gCGUCgcgACCGCCGCCCUCGCgccUGg -3'
miRNA:   3'- gagGCAG---UGGUGGUGGGGGCGau-ACa -5'
3608 5' -58.4 NC_001650.1 + 115663 0.67 0.788353
Target:  5'- -gCCGggagaGCCACCAgUCgCCGCUGUGa -3'
miRNA:   3'- gaGGCag---UGGUGGUgGG-GGCGAUACa -5'
3608 5' -58.4 NC_001650.1 + 120612 0.68 0.761154
Target:  5'- -cCCGagggCACCcCCGCCCCCGCc---- -3'
miRNA:   3'- gaGGCa---GUGGuGGUGGGGGCGauaca -5'
3608 5' -58.4 NC_001650.1 + 121088 0.66 0.83093
Target:  5'- -gUUGUCGCgCGCCGCCCCCaGCg---- -3'
miRNA:   3'- gaGGCAGUG-GUGGUGGGGG-CGauaca -5'
3608 5' -58.4 NC_001650.1 + 121792 0.66 0.83093
Target:  5'- -gCUGcCcuCCGCCGCCCCCGCg--GUc -3'
miRNA:   3'- gaGGCaGu-GGUGGUGGGGGCGauaCA- -5'
3608 5' -58.4 NC_001650.1 + 122356 0.72 0.536617
Target:  5'- -gCCGUCucccccucCCGCCGCCCCCGCc---- -3'
miRNA:   3'- gaGGCAGu-------GGUGGUGGGGGCGauaca -5'
3608 5' -58.4 NC_001650.1 + 128547 0.66 0.857507
Target:  5'- uCUCCGUCGguCCcccaucaccucgcccACCGCCUCCGCg---- -3'
miRNA:   3'- -GAGGCAGU--GG---------------UGGUGGGGGCGauaca -5'
3608 5' -58.4 NC_001650.1 + 129837 0.66 0.869259
Target:  5'- -gCCGcCACCGCCGCCCaguccUCGCccGUGa -3'
miRNA:   3'- gaGGCaGUGGUGGUGGG-----GGCGa-UACa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.