miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3608 5' -58.4 NC_001650.1 + 27079 1.07 0.002861
Target:  5'- uCUCCGUCACCACCACCCCCGCUAUGUg -3'
miRNA:   3'- -GAGGCAGUGGUGGUGGGGGCGAUACA- -5'
3608 5' -58.4 NC_001650.1 + 27457 0.66 0.861973
Target:  5'- gCUCCGUgGCCACaCugUCCa-CUAUGg -3'
miRNA:   3'- -GAGGCAgUGGUG-GugGGGgcGAUACa -5'
3608 5' -58.4 NC_001650.1 + 27697 0.69 0.674645
Target:  5'- uCUCCc-CGCCGCCGCCCCgGUUGg-- -3'
miRNA:   3'- -GAGGcaGUGGUGGUGGGGgCGAUaca -5'
3608 5' -58.4 NC_001650.1 + 34574 0.71 0.575563
Target:  5'- -----cCACCACUACCCCgGCUAUGa -3'
miRNA:   3'- gaggcaGUGGUGGUGGGGgCGAUACa -5'
3608 5' -58.4 NC_001650.1 + 46292 0.67 0.797165
Target:  5'- aCUCC-UCGCgACCuCCCCCGUUGc-- -3'
miRNA:   3'- -GAGGcAGUGgUGGuGGGGGCGAUaca -5'
3608 5' -58.4 NC_001650.1 + 46717 0.68 0.742468
Target:  5'- -cCCgGUCGCCGCCGCCCCgaCGCc---- -3'
miRNA:   3'- gaGG-CAGUGGUGGUGGGG--GCGauaca -5'
3608 5' -58.4 NC_001650.1 + 49811 0.66 0.83093
Target:  5'- gUCCGUgACCAgcaucgaguCCACCUCCGCc---- -3'
miRNA:   3'- gAGGCAgUGGU---------GGUGGGGGCGauaca -5'
3608 5' -58.4 NC_001650.1 + 50492 0.71 0.595286
Target:  5'- -gCCGUCucccCCGCCGCCgCCCGCUc--- -3'
miRNA:   3'- gaGGCAGu---GGUGGUGG-GGGCGAuaca -5'
3608 5' -58.4 NC_001650.1 + 51382 0.69 0.69431
Target:  5'- -cCCGUagaccacgcgCGCCGCCugCCCCGCg---- -3'
miRNA:   3'- gaGGCA----------GUGGUGGugGGGGCGauaca -5'
3608 5' -58.4 NC_001650.1 + 53296 0.68 0.761154
Target:  5'- --gCGUCGCaaaACCACCCCCGUc---- -3'
miRNA:   3'- gagGCAGUGg--UGGUGGGGGCGauaca -5'
3608 5' -58.4 NC_001650.1 + 56970 0.67 0.797165
Target:  5'- aUCUa-UACCAagGCCCCCGCUGUGa -3'
miRNA:   3'- gAGGcaGUGGUggUGGGGGCGAUACa -5'
3608 5' -58.4 NC_001650.1 + 58364 0.67 0.788353
Target:  5'- -gCCaUCGCCACCACCCCC-Ca---- -3'
miRNA:   3'- gaGGcAGUGGUGGUGGGGGcGauaca -5'
3608 5' -58.4 NC_001650.1 + 65814 0.67 0.788353
Target:  5'- -cCCGUCGCC-CCAUCCuCCGCc---- -3'
miRNA:   3'- gaGGCAGUGGuGGUGGG-GGCGauaca -5'
3608 5' -58.4 NC_001650.1 + 66332 0.76 0.323932
Target:  5'- gCUCgGUCACCGCCGCCCCaaaGUUGa-- -3'
miRNA:   3'- -GAGgCAGUGGUGGUGGGGg--CGAUaca -5'
3608 5' -58.4 NC_001650.1 + 66662 0.69 0.704072
Target:  5'- aCUCUGUCugCGCgGCCCCCuucuccaaGCcgGUGg -3'
miRNA:   3'- -GAGGCAGugGUGgUGGGGG--------CGa-UACa -5'
3608 5' -58.4 NC_001650.1 + 70992 0.71 0.555991
Target:  5'- -cCCGUcCACCACCuCCCCCGaggggGUGg -3'
miRNA:   3'- gaGGCA-GUGGUGGuGGGGGCga---UACa -5'
3608 5' -58.4 NC_001650.1 + 72467 0.66 0.83093
Target:  5'- gUCUGUCACguuCAgUAUCCCCGCcAUGUc -3'
miRNA:   3'- gAGGCAGUG---GUgGUGGGGGCGaUACA- -5'
3608 5' -58.4 NC_001650.1 + 75110 0.68 0.751861
Target:  5'- gUCCGggGgCGCgACCCCCGCgaagAUGUu -3'
miRNA:   3'- gAGGCagUgGUGgUGGGGGCGa---UACA- -5'
3608 5' -58.4 NC_001650.1 + 78149 0.67 0.822727
Target:  5'- -gCC-UCGCaGCCGCCCCCGCUc--- -3'
miRNA:   3'- gaGGcAGUGgUGGUGGGGGCGAuaca -5'
3608 5' -58.4 NC_001650.1 + 80228 0.69 0.723418
Target:  5'- gCUCuCGggUGCCGCCuacuCCCCCGCUAg-- -3'
miRNA:   3'- -GAG-GCa-GUGGUGGu---GGGGGCGAUaca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.