miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3608 5' -58.4 NC_001650.1 + 27079 1.07 0.002861
Target:  5'- uCUCCGUCACCACCACCCCCGCUAUGUg -3'
miRNA:   3'- -GAGGCAGUGGUGGUGGGGGCGAUACA- -5'
3608 5' -58.4 NC_001650.1 + 151191 0.76 0.31684
Target:  5'- cCUCCGcCGCCACCACCgCCGCc---- -3'
miRNA:   3'- -GAGGCaGUGGUGGUGGgGGCGauaca -5'
3608 5' -58.4 NC_001650.1 + 66332 0.76 0.323932
Target:  5'- gCUCgGUCACCGCCGCCCCaaaGUUGa-- -3'
miRNA:   3'- -GAGgCAGUGGUGGUGGGGg--CGAUaca -5'
3608 5' -58.4 NC_001650.1 + 95803 0.75 0.353473
Target:  5'- gCUgCGUCGCCAUCGCUCUCGCUGUc- -3'
miRNA:   3'- -GAgGCAGUGGUGGUGGGGGCGAUAca -5'
3608 5' -58.4 NC_001650.1 + 106334 0.74 0.418052
Target:  5'- --aCGUcCACCACCACCCCCcUUGUGg -3'
miRNA:   3'- gagGCA-GUGGUGGUGGGGGcGAUACa -5'
3608 5' -58.4 NC_001650.1 + 89600 0.72 0.536617
Target:  5'- -cCCGUCuCCACCACCCgCGCg---- -3'
miRNA:   3'- gaGGCAGuGGUGGUGGGgGCGauaca -5'
3608 5' -58.4 NC_001650.1 + 122356 0.72 0.536617
Target:  5'- -gCCGUCucccccucCCGCCGCCCCCGCc---- -3'
miRNA:   3'- gaGGCAGu-------GGUGGUGGGGGCGauaca -5'
3608 5' -58.4 NC_001650.1 + 70992 0.71 0.555991
Target:  5'- -cCCGUcCACCACCuCCCCCGaggggGUGg -3'
miRNA:   3'- gaGGCA-GUGGUGGuGGGGGCga---UACa -5'
3608 5' -58.4 NC_001650.1 + 34574 0.71 0.575563
Target:  5'- -----cCACCACUACCCCgGCUAUGa -3'
miRNA:   3'- gaggcaGUGGUGGUGGGGgCGAUACa -5'
3608 5' -58.4 NC_001650.1 + 50492 0.71 0.595286
Target:  5'- -gCCGUCucccCCGCCGCCgCCCGCUc--- -3'
miRNA:   3'- gaGGCAGu---GGUGGUGG-GGGCGAuaca -5'
3608 5' -58.4 NC_001650.1 + 88606 0.7 0.625045
Target:  5'- -cCCGcCGCCACCACCCCCu------ -3'
miRNA:   3'- gaGGCaGUGGUGGUGGGGGcgauaca -5'
3608 5' -58.4 NC_001650.1 + 136520 0.7 0.625045
Target:  5'- -gCCGcCGCCACCGCCCCCa------ -3'
miRNA:   3'- gaGGCaGUGGUGGUGGGGGcgauaca -5'
3608 5' -58.4 NC_001650.1 + 163380 0.7 0.634984
Target:  5'- -aCCGcCACCGauGCCCCCGCUAUc- -3'
miRNA:   3'- gaGGCaGUGGUggUGGGGGCGAUAca -5'
3608 5' -58.4 NC_001650.1 + 108300 0.7 0.664759
Target:  5'- -aCCGUggucaGCUGCCGCCCCCGCg---- -3'
miRNA:   3'- gaGGCAg----UGGUGGUGGGGGCGauaca -5'
3608 5' -58.4 NC_001650.1 + 27697 0.69 0.674645
Target:  5'- uCUCCc-CGCCGCCGCCCCgGUUGg-- -3'
miRNA:   3'- -GAGGcaGUGGUGGUGGGGgCGAUaca -5'
3608 5' -58.4 NC_001650.1 + 142917 0.69 0.69431
Target:  5'- -gCCGcgcCGCCGCCGCCgCCCGCUc--- -3'
miRNA:   3'- gaGGCa--GUGGUGGUGG-GGGCGAuaca -5'
3608 5' -58.4 NC_001650.1 + 51382 0.69 0.69431
Target:  5'- -cCCGUagaccacgcgCGCCGCCugCCCCGCg---- -3'
miRNA:   3'- gaGGCA----------GUGGUGGugGGGGCGauaca -5'
3608 5' -58.4 NC_001650.1 + 66662 0.69 0.704072
Target:  5'- aCUCUGUCugCGCgGCCCCCuucuccaaGCcgGUGg -3'
miRNA:   3'- -GAGGCAGugGUGgUGGGGG--------CGa-UACa -5'
3608 5' -58.4 NC_001650.1 + 102974 0.69 0.713778
Target:  5'- -gCCGgCGCCGCCuccucCCCCUGCUGaUGUu -3'
miRNA:   3'- gaGGCaGUGGUGGu----GGGGGCGAU-ACA- -5'
3608 5' -58.4 NC_001650.1 + 80228 0.69 0.723418
Target:  5'- gCUCuCGggUGCCGCCuacuCCCCCGCUAg-- -3'
miRNA:   3'- -GAG-GCa-GUGGUGGu---GGGGGCGAUaca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.