miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3608 5' -58.4 NC_001650.1 + 66332 0.76 0.323932
Target:  5'- gCUCgGUCACCGCCGCCCCaaaGUUGa-- -3'
miRNA:   3'- -GAGgCAGUGGUGGUGGGGg--CGAUaca -5'
3608 5' -58.4 NC_001650.1 + 82298 0.66 0.869259
Target:  5'- -cCCGcUCGCCccacCCGCCCCCGUUc--- -3'
miRNA:   3'- gaGGC-AGUGGu---GGUGGGGGCGAuaca -5'
3608 5' -58.4 NC_001650.1 + 136490 0.67 0.822727
Target:  5'- -cCCGUCAgCuuCGCCCCCGCc---- -3'
miRNA:   3'- gaGGCAGUgGugGUGGGGGCGauaca -5'
3608 5' -58.4 NC_001650.1 + 155637 0.67 0.805837
Target:  5'- -cCCGcUCACCACgAgCCCCGCg---- -3'
miRNA:   3'- gaGGC-AGUGGUGgUgGGGGCGauaca -5'
3608 5' -58.4 NC_001650.1 + 56970 0.67 0.797165
Target:  5'- aUCUa-UACCAagGCCCCCGCUGUGa -3'
miRNA:   3'- gAGGcaGUGGUggUGGGGGCGAUACa -5'
3608 5' -58.4 NC_001650.1 + 46292 0.67 0.797165
Target:  5'- aCUCC-UCGCgACCuCCCCCGUUGc-- -3'
miRNA:   3'- -GAGGcAGUGgUGGuGGGGGCGAUaca -5'
3608 5' -58.4 NC_001650.1 + 115663 0.67 0.788353
Target:  5'- -gCCGggagaGCCACCAgUCgCCGCUGUGa -3'
miRNA:   3'- gaGGCag---UGGUGGUgGG-GGCGAUACa -5'
3608 5' -58.4 NC_001650.1 + 120612 0.68 0.761154
Target:  5'- -cCCGagggCACCcCCGCCCCCGCc---- -3'
miRNA:   3'- gaGGCa---GUGGuGGUGGGGGCGauaca -5'
3608 5' -58.4 NC_001650.1 + 136520 0.7 0.625045
Target:  5'- -gCCGcCGCCACCGCCCCCa------ -3'
miRNA:   3'- gaGGCaGUGGUGGUGGGGGcgauaca -5'
3608 5' -58.4 NC_001650.1 + 95803 0.75 0.353473
Target:  5'- gCUgCGUCGCCAUCGCUCUCGCUGUc- -3'
miRNA:   3'- -GAgGCAGUGGUGGUGGGGGCGAUAca -5'
3608 5' -58.4 NC_001650.1 + 163380 0.7 0.634984
Target:  5'- -aCCGcCACCGauGCCCCCGCUAUc- -3'
miRNA:   3'- gaGGCaGUGGUggUGGGGGCGAUAca -5'
3608 5' -58.4 NC_001650.1 + 88606 0.7 0.625045
Target:  5'- -cCCGcCGCCACCACCCCCu------ -3'
miRNA:   3'- gaGGCaGUGGUGGUGGGGGcgauaca -5'
3608 5' -58.4 NC_001650.1 + 50492 0.71 0.595286
Target:  5'- -gCCGUCucccCCGCCGCCgCCCGCUc--- -3'
miRNA:   3'- gaGGCAGu---GGUGGUGG-GGGCGAuaca -5'
3608 5' -58.4 NC_001650.1 + 34574 0.71 0.575563
Target:  5'- -----cCACCACUACCCCgGCUAUGa -3'
miRNA:   3'- gaggcaGUGGUGGUGGGGgCGAUACa -5'
3608 5' -58.4 NC_001650.1 + 70992 0.71 0.555991
Target:  5'- -cCCGUcCACCACCuCCCCCGaggggGUGg -3'
miRNA:   3'- gaGGCA-GUGGUGGuGGGGGCga---UACa -5'
3608 5' -58.4 NC_001650.1 + 89600 0.72 0.536617
Target:  5'- -cCCGUCuCCACCACCCgCGCg---- -3'
miRNA:   3'- gaGGCAGuGGUGGUGGGgGCGauaca -5'
3608 5' -58.4 NC_001650.1 + 122356 0.72 0.536617
Target:  5'- -gCCGUCucccccucCCGCCGCCCCCGCc---- -3'
miRNA:   3'- gaGGCAGu-------GGUGGUGGGGGCGauaca -5'
3608 5' -58.4 NC_001650.1 + 106334 0.74 0.418052
Target:  5'- --aCGUcCACCACCACCCCCcUUGUGg -3'
miRNA:   3'- gagGCA-GUGGUGGUGGGGGcGAUACa -5'
3608 5' -58.4 NC_001650.1 + 151191 0.76 0.31684
Target:  5'- cCUCCGcCGCCACCACCgCCGCc---- -3'
miRNA:   3'- -GAGGCaGUGGUGGUGGgGGCGauaca -5'
3608 5' -58.4 NC_001650.1 + 129837 0.66 0.869259
Target:  5'- -gCCGcCACCGCCGCCCaguccUCGCccGUGa -3'
miRNA:   3'- gaGGCaGUGGUGGUGGG-----GGCGa-UACa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.