miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3609 5' -55.6 NC_001650.1 + 27221 1.12 0.002497
Target:  5'- aGGUUUUCCCUGCAGGGGCUCUUGGCGa -3'
miRNA:   3'- -CCAAAAGGGACGUCCCCGAGAACCGC- -5'
3609 5' -55.6 NC_001650.1 + 63450 0.78 0.363116
Target:  5'- cGGUcUUUUCCUGCAGGGGCUCguucGCc -3'
miRNA:   3'- -CCA-AAAGGGACGUCCCCGAGaac-CGc -5'
3609 5' -55.6 NC_001650.1 + 158156 0.71 0.704808
Target:  5'- gGGUgaccgccUCCCUcacGCuGGGGUUCUUGGgGa -3'
miRNA:   3'- -CCAaa-----AGGGA---CGuCCCCGAGAACCgC- -5'
3609 5' -55.6 NC_001650.1 + 59448 0.71 0.714729
Target:  5'- aGUcgUCCCUGCAGGcGCagUUGGCc -3'
miRNA:   3'- cCAaaAGGGACGUCCcCGagAACCGc -5'
3609 5' -55.6 NC_001650.1 + 57188 0.71 0.744042
Target:  5'- gGGUcacCCCUcacaGCGGGGGC-CUUGGUa -3'
miRNA:   3'- -CCAaaaGGGA----CGUCCCCGaGAACCGc -5'
3609 5' -55.6 NC_001650.1 + 136814 0.7 0.781729
Target:  5'- cGGUga-CCCUcuuGGGGUUCUUGGCc -3'
miRNA:   3'- -CCAaaaGGGAcguCCCCGAGAACCGc -5'
3609 5' -55.6 NC_001650.1 + 26575 0.69 0.808637
Target:  5'- -----cCCCUGCucucGGGGCUCacGGUGg -3'
miRNA:   3'- ccaaaaGGGACGu---CCCCGAGaaCCGC- -5'
3609 5' -55.6 NC_001650.1 + 87064 0.68 0.857983
Target:  5'- aGUUggCCa-GCAGGGGCUUgaUGGUGa -3'
miRNA:   3'- cCAAaaGGgaCGUCCCCGAGa-ACCGC- -5'
3609 5' -55.6 NC_001650.1 + 117551 0.68 0.857983
Target:  5'- ----gUCCa-GCAGGGcGCUCUcGGCGu -3'
miRNA:   3'- ccaaaAGGgaCGUCCC-CGAGAaCCGC- -5'
3609 5' -55.6 NC_001650.1 + 69740 0.68 0.857983
Target:  5'- cGGacggCCCUGCAGGuguagaagauaGGCUCgggccucagGGCGg -3'
miRNA:   3'- -CCaaaaGGGACGUCC-----------CCGAGaa-------CCGC- -5'
3609 5' -55.6 NC_001650.1 + 99629 0.68 0.865542
Target:  5'- cGGUggUCCCgGUGGuGGGCU--UGGCa -3'
miRNA:   3'- -CCAaaAGGGaCGUC-CCCGAgaACCGc -5'
3609 5' -55.6 NC_001650.1 + 124496 0.68 0.865542
Target:  5'- cGGccucgUCCCUGCcauugGGGGGUUuggaCUUGGUGu -3'
miRNA:   3'- -CCaaa--AGGGACG-----UCCCCGA----GAACCGC- -5'
3609 5' -55.6 NC_001650.1 + 94031 0.68 0.865542
Target:  5'- cGGUgaa-CCUGCcGGGGCUCacGGUc -3'
miRNA:   3'- -CCAaaagGGACGuCCCCGAGaaCCGc -5'
3609 5' -55.6 NC_001650.1 + 56818 0.68 0.880031
Target:  5'- gGGUca-CCCUGgAGGaGGCUUuuUUGGCu -3'
miRNA:   3'- -CCAaaaGGGACgUCC-CCGAG--AACCGc -5'
3609 5' -55.6 NC_001650.1 + 91142 0.68 0.880031
Target:  5'- gGGUccUCCCggccGCGGGGGCUgCU--GCGg -3'
miRNA:   3'- -CCAaaAGGGa---CGUCCCCGA-GAacCGC- -5'
3609 5' -55.6 NC_001650.1 + 156813 0.67 0.886952
Target:  5'- cGGUgauggCCUGCAGGGaGUUCUgcgccgagcugGGCGu -3'
miRNA:   3'- -CCAaaag-GGACGUCCC-CGAGAa----------CCGC- -5'
3609 5' -55.6 NC_001650.1 + 52875 0.67 0.891665
Target:  5'- ----gUCCCUGCuGGGGCgauuccgCUcgaggcucacggucUGGCGc -3'
miRNA:   3'- ccaaaAGGGACGuCCCCGa------GA--------------ACCGC- -5'
3609 5' -55.6 NC_001650.1 + 62856 0.67 0.89365
Target:  5'- uGGgaugCCC--CAGGGGCUCggGGCu -3'
miRNA:   3'- -CCaaaaGGGacGUCCCCGAGaaCCGc -5'
3609 5' -55.6 NC_001650.1 + 89169 0.67 0.900124
Target:  5'- aGGg--UCCUgUGCccGGGGCUCcggGGCGa -3'
miRNA:   3'- -CCaaaAGGG-ACGu-CCCCGAGaa-CCGC- -5'
3609 5' -55.6 NC_001650.1 + 93606 0.67 0.900124
Target:  5'- uGGUggUCCacaggGUGGGGGUgcccaUCUUGGCc -3'
miRNA:   3'- -CCAaaAGGga---CGUCCCCG-----AGAACCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.