Results 1 - 20 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3609 | 5' | -55.6 | NC_001650.1 | + | 4077 | 0.66 | 0.929009 |
Target: 5'- uGGagaggCCCUGCcaggcauGGGGUUCUcauUGGCu -3' miRNA: 3'- -CCaaaa-GGGACGu------CCCCGAGA---ACCGc -5' |
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3609 | 5' | -55.6 | NC_001650.1 | + | 16746 | 0.66 | 0.929009 |
Target: 5'- gGGUggccaUCUUGguGGGGUggccaUCUUGGUGg -3' miRNA: 3'- -CCAaaa--GGGACguCCCCG-----AGAACCGC- -5' |
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3609 | 5' | -55.6 | NC_001650.1 | + | 26575 | 0.69 | 0.808637 |
Target: 5'- -----cCCCUGCucucGGGGCUCacGGUGg -3' miRNA: 3'- ccaaaaGGGACGu---CCCCGAGaaCCGC- -5' |
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3609 | 5' | -55.6 | NC_001650.1 | + | 27221 | 1.12 | 0.002497 |
Target: 5'- aGGUUUUCCCUGCAGGGGCUCUUGGCGa -3' miRNA: 3'- -CCAAAAGGGACGUCCCCGAGAACCGC- -5' |
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3609 | 5' | -55.6 | NC_001650.1 | + | 49579 | 0.66 | 0.943519 |
Target: 5'- gGGUggUCUCUGUgauGGGGGCgga-GGUGg -3' miRNA: 3'- -CCAaaAGGGACG---UCCCCGagaaCCGC- -5' |
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3609 | 5' | -55.6 | NC_001650.1 | + | 52875 | 0.67 | 0.891665 |
Target: 5'- ----gUCCCUGCuGGGGCgauuccgCUcgaggcucacggucUGGCGc -3' miRNA: 3'- ccaaaAGGGACGuCCCCGa------GA--------------ACCGC- -5' |
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3609 | 5' | -55.6 | NC_001650.1 | + | 56818 | 0.68 | 0.880031 |
Target: 5'- gGGUca-CCCUGgAGGaGGCUUuuUUGGCu -3' miRNA: 3'- -CCAaaaGGGACgUCC-CCGAG--AACCGc -5' |
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3609 | 5' | -55.6 | NC_001650.1 | + | 57188 | 0.71 | 0.744042 |
Target: 5'- gGGUcacCCCUcacaGCGGGGGC-CUUGGUa -3' miRNA: 3'- -CCAaaaGGGA----CGUCCCCGaGAACCGc -5' |
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3609 | 5' | -55.6 | NC_001650.1 | + | 59448 | 0.71 | 0.714729 |
Target: 5'- aGUcgUCCCUGCAGGcGCagUUGGCc -3' miRNA: 3'- cCAaaAGGGACGUCCcCGagAACCGc -5' |
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3609 | 5' | -55.6 | NC_001650.1 | + | 62856 | 0.67 | 0.89365 |
Target: 5'- uGGgaugCCC--CAGGGGCUCggGGCu -3' miRNA: 3'- -CCaaaaGGGacGUCCCCGAGaaCCGc -5' |
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3609 | 5' | -55.6 | NC_001650.1 | + | 63450 | 0.78 | 0.363116 |
Target: 5'- cGGUcUUUUCCUGCAGGGGCUCguucGCc -3' miRNA: 3'- -CCA-AAAGGGACGUCCCCGAGaac-CGc -5' |
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3609 | 5' | -55.6 | NC_001650.1 | + | 69740 | 0.68 | 0.857983 |
Target: 5'- cGGacggCCCUGCAGGuguagaagauaGGCUCgggccucagGGCGg -3' miRNA: 3'- -CCaaaaGGGACGUCC-----------CCGAGaa-------CCGC- -5' |
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3609 | 5' | -55.6 | NC_001650.1 | + | 73781 | 0.66 | 0.938917 |
Target: 5'- -----gCCCUGCcccuGGGGCUgUUGGa- -3' miRNA: 3'- ccaaaaGGGACGu---CCCCGAgAACCgc -5' |
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3609 | 5' | -55.6 | NC_001650.1 | + | 73983 | 0.67 | 0.900124 |
Target: 5'- ----cUgCCUGCAGGGGCUgUagaGGCc -3' miRNA: 3'- ccaaaAgGGACGUCCCCGAgAa--CCGc -5' |
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3609 | 5' | -55.6 | NC_001650.1 | + | 87064 | 0.68 | 0.857983 |
Target: 5'- aGUUggCCa-GCAGGGGCUUgaUGGUGa -3' miRNA: 3'- cCAAaaGGgaCGUCCCCGAGa-ACCGC- -5' |
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3609 | 5' | -55.6 | NC_001650.1 | + | 88303 | 0.67 | 0.912379 |
Target: 5'- -----gCCCUGgAGGGGCgc--GGCGg -3' miRNA: 3'- ccaaaaGGGACgUCCCCGagaaCCGC- -5' |
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3609 | 5' | -55.6 | NC_001650.1 | + | 89169 | 0.67 | 0.900124 |
Target: 5'- aGGg--UCCUgUGCccGGGGCUCcggGGCGa -3' miRNA: 3'- -CCaaaAGGG-ACGu-CCCCGAGaa-CCGC- -5' |
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3609 | 5' | -55.6 | NC_001650.1 | + | 91142 | 0.68 | 0.880031 |
Target: 5'- gGGUccUCCCggccGCGGGGGCUgCU--GCGg -3' miRNA: 3'- -CCAaaAGGGa---CGUCCCCGA-GAacCGC- -5' |
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3609 | 5' | -55.6 | NC_001650.1 | + | 93606 | 0.67 | 0.900124 |
Target: 5'- uGGUggUCCacaggGUGGGGGUgcccaUCUUGGCc -3' miRNA: 3'- -CCAaaAGGga---CGUCCCCG-----AGAACCGc -5' |
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3609 | 5' | -55.6 | NC_001650.1 | + | 94031 | 0.68 | 0.865542 |
Target: 5'- cGGUgaa-CCUGCcGGGGCUCacGGUc -3' miRNA: 3'- -CCAaaagGGACGuCCCCGAGaaCCGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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