miRNA display CGI


Results 21 - 40 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3611 3' -60.8 NC_001650.1 + 94680 0.69 0.576615
Target:  5'- gAGgagCGCCGCCUcGGUCugguCGAGGGCgUCc -3'
miRNA:   3'- -UCa--GUGGCGGGuCCAG----GCUCUCGgAG- -5'
3611 3' -60.8 NC_001650.1 + 96462 0.66 0.758372
Target:  5'- gGGUCGCCaCCCAGGaugaccagcgacCCGGGGGCg-- -3'
miRNA:   3'- -UCAGUGGcGGGUCCa-----------GGCUCUCGgag -5'
3611 3' -60.8 NC_001650.1 + 109690 0.7 0.491229
Target:  5'- ---aGCUGCCCAGGUCCuacGAGAGgCCa- -3'
miRNA:   3'- ucagUGGCGGGUCCAGG---CUCUC-GGag -5'
3611 3' -60.8 NC_001650.1 + 114829 0.67 0.694061
Target:  5'- cAGUagGCUGUCCAGGcugacgUCGuGGGCCUCg -3'
miRNA:   3'- -UCAg-UGGCGGGUCCa-----GGCuCUCGGAG- -5'
3611 3' -60.8 NC_001650.1 + 121386 0.69 0.56691
Target:  5'- uGGcCAUCGCCCcGG-CCGGGGgcgccGCCUCg -3'
miRNA:   3'- -UCaGUGGCGGGuCCaGGCUCU-----CGGAG- -5'
3611 3' -60.8 NC_001650.1 + 121401 0.66 0.726651
Target:  5'- --cCACCGUCCgccgggcgcacccguAGGUCUGgucguggagcAGGGCCUCg -3'
miRNA:   3'- ucaGUGGCGGG---------------UCCAGGC----------UCUCGGAG- -5'
3611 3' -60.8 NC_001650.1 + 121784 0.67 0.664835
Target:  5'- --cCGCCGCCCccgcGGUCCaGGGGGUCg- -3'
miRNA:   3'- ucaGUGGCGGGu---CCAGG-CUCUCGGag -5'
3611 3' -60.8 NC_001650.1 + 121868 0.67 0.664835
Target:  5'- aGGUgGCCG-CCAGGUCguccucgGGGGGCCUg -3'
miRNA:   3'- -UCAgUGGCgGGUCCAGg------CUCUCGGAg -5'
3611 3' -60.8 NC_001650.1 + 125233 0.68 0.604941
Target:  5'- cGUCcuCCGCCCccGGGaCCcccucuggcgaucGAGAGCCUCu -3'
miRNA:   3'- uCAGu-GGCGGG--UCCaGG-------------CUCUCGGAG- -5'
3611 3' -60.8 NC_001650.1 + 127406 0.7 0.500455
Target:  5'- --cCGCCGCCCGGGagaCCG-GGGCCg- -3'
miRNA:   3'- ucaGUGGCGGGUCCa--GGCuCUCGGag -5'
3611 3' -60.8 NC_001650.1 + 127614 0.76 0.217142
Target:  5'- -cUCGCUGCCCAGGUCCGGGc-UCUCg -3'
miRNA:   3'- ucAGUGGCGGGUCCAGGCUCucGGAG- -5'
3611 3' -60.8 NC_001650.1 + 130250 0.67 0.684356
Target:  5'- gGGUCACCGagaacauaaacuCCCuGGagUCGAGGGCCa- -3'
miRNA:   3'- -UCAGUGGC------------GGGuCCa-GGCUCUCGGag -5'
3611 3' -60.8 NC_001650.1 + 131013 0.69 0.576615
Target:  5'- ---gACCG-CCAGGUCCGGGGcguccagcGCCUCc -3'
miRNA:   3'- ucagUGGCgGGUCCAGGCUCU--------CGGAG- -5'
3611 3' -60.8 NC_001650.1 + 131432 0.66 0.732321
Target:  5'- gGGUC-UCGgggaCCGGGUCCacgGAGGGCCUg -3'
miRNA:   3'- -UCAGuGGCg---GGUCCAGG---CUCUCGGAg -5'
3611 3' -60.8 NC_001650.1 + 132830 0.66 0.760204
Target:  5'- gGGagGCCGCCugCAGGUUgGGGGccagcGCCUCc -3'
miRNA:   3'- -UCagUGGCGG--GUCCAGgCUCU-----CGGAG- -5'
3611 3' -60.8 NC_001650.1 + 134145 0.66 0.722856
Target:  5'- cGGcCGCCuGCCgGGGUCUGGGGGgCg- -3'
miRNA:   3'- -UCaGUGG-CGGgUCCAGGCUCUCgGag -5'
3611 3' -60.8 NC_001650.1 + 134352 0.7 0.491229
Target:  5'- cGGUCGCC-CCCuuGGUCUGGucGGGUCUCa -3'
miRNA:   3'- -UCAGUGGcGGGu-CCAGGCU--CUCGGAG- -5'
3611 3' -60.8 NC_001650.1 + 134926 0.67 0.703717
Target:  5'- gGGUCcgccucugcaGCCGCCUcuGGGgcaUCCGGGgggucAGCCUCu -3'
miRNA:   3'- -UCAG----------UGGCGGG--UCC---AGGCUC-----UCGGAG- -5'
3611 3' -60.8 NC_001650.1 + 136517 0.66 0.713319
Target:  5'- -cUCACgUGCCaCAGGUCgGGGGGCUg- -3'
miRNA:   3'- ucAGUG-GCGG-GUCCAGgCUCUCGGag -5'
3611 3' -60.8 NC_001650.1 + 136619 0.69 0.586355
Target:  5'- --cCACCGCCCGGGggcgUCGGGGcGCCc- -3'
miRNA:   3'- ucaGUGGCGGGUCCa---GGCUCU-CGGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.