miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3611 3' -60.8 NC_001650.1 + 703 0.66 0.741707
Target:  5'- ---gGCCGCCCAuuGG-CCGAGAGgaguccCCUCc -3'
miRNA:   3'- ucagUGGCGGGU--CCaGGCUCUC------GGAG- -5'
3611 3' -60.8 NC_001650.1 + 22180 0.67 0.703717
Target:  5'- gGGUCcCCgaggggcgugaaGCCCAGGUagCCGGGGGuCCUg -3'
miRNA:   3'- -UCAGuGG------------CGGGUCCA--GGCUCUC-GGAg -5'
3611 3' -60.8 NC_001650.1 + 23646 0.66 0.754696
Target:  5'- cAGUCAuCCGgcaccuggggggucuCCCAGGUCC-AGGGCUccaUCg -3'
miRNA:   3'- -UCAGU-GGC---------------GGGUCCAGGcUCUCGG---AG- -5'
3611 3' -60.8 NC_001650.1 + 26849 0.76 0.227592
Target:  5'- ---uGCUGCCCGGGgCCGAGAGCCa- -3'
miRNA:   3'- ucagUGGCGGGUCCaGGCUCUCGGag -5'
3611 3' -60.8 NC_001650.1 + 27454 0.66 0.741707
Target:  5'- cGGUgcugUACCugGCCCGGGUCCaGAagcaGGCCUCc -3'
miRNA:   3'- -UCA----GUGG--CGGGUCCAGG-CUc---UCGGAG- -5'
3611 3' -60.8 NC_001650.1 + 27610 0.66 0.717142
Target:  5'- cGUgCACCGCCUgcuuggcguuaaacuGGGUC--AGGGCCUCc -3'
miRNA:   3'- uCA-GUGGCGGG---------------UCCAGgcUCUCGGAG- -5'
3611 3' -60.8 NC_001650.1 + 27691 0.7 0.51913
Target:  5'- cGcCGCCGCCCcGGUUgGAG-GCCUg -3'
miRNA:   3'- uCaGUGGCGGGuCCAGgCUCuCGGAg -5'
3611 3' -60.8 NC_001650.1 + 28250 0.71 0.429064
Target:  5'- -cUCGCagauGCCCGccUCCGAGAGCCUCu -3'
miRNA:   3'- ucAGUGg---CGGGUccAGGCUCUCGGAG- -5'
3611 3' -60.8 NC_001650.1 + 29807 1.08 0.001372
Target:  5'- cAGUCACCGCCCAGGUCCGAGAGCCUCu -3'
miRNA:   3'- -UCAGUGGCGGGUCCAGGCUCUCGGAG- -5'
3611 3' -60.8 NC_001650.1 + 37088 0.68 0.645217
Target:  5'- uAGUCGCCcgGCCCgAGGUgCGGGugcaggcacAGCCUg -3'
miRNA:   3'- -UCAGUGG--CGGG-UCCAgGCUC---------UCGGAg -5'
3611 3' -60.8 NC_001650.1 + 46321 0.68 0.605922
Target:  5'- aAGUCAUCGCgCCGGG-CCGGGcGCUc- -3'
miRNA:   3'- -UCAGUGGCG-GGUCCaGGCUCuCGGag -5'
3611 3' -60.8 NC_001650.1 + 48200 0.68 0.600042
Target:  5'- cGGUCAaCGCCCuggagaugagcAGGaacgggcugcacaugUCCGAGGGUCUCg -3'
miRNA:   3'- -UCAGUgGCGGG-----------UCC---------------AGGCUCUCGGAG- -5'
3611 3' -60.8 NC_001650.1 + 49507 0.68 0.615735
Target:  5'- cGGUCACgcuggccaGCuCCAGGcCCGGGGGCagCUCg -3'
miRNA:   3'- -UCAGUGg-------CG-GGUCCaGGCUCUCG--GAG- -5'
3611 3' -60.8 NC_001650.1 + 53004 0.76 0.238464
Target:  5'- cGUcCugCGCCCGGGccCCGAGGGCCg- -3'
miRNA:   3'- uCA-GugGCGGGUCCa-GGCUCUCGGag -5'
3611 3' -60.8 NC_001650.1 + 54437 0.7 0.500455
Target:  5'- --gCACC-CCUAGGUucgCCGGGAGCCUg -3'
miRNA:   3'- ucaGUGGcGGGUCCA---GGCUCUCGGAg -5'
3611 3' -60.8 NC_001650.1 + 64704 0.66 0.748224
Target:  5'- gGGUCGCgUGCUgGGGUCUGAGAacauaguugacgcuGCCa- -3'
miRNA:   3'- -UCAGUG-GCGGgUCCAGGCUCU--------------CGGag -5'
3611 3' -60.8 NC_001650.1 + 80668 0.71 0.429064
Target:  5'- cGGcCuCC-CCCAGGUCCGAGAGCg-- -3'
miRNA:   3'- -UCaGuGGcGGGUCCAGGCUCUCGgag -5'
3611 3' -60.8 NC_001650.1 + 80905 0.72 0.420565
Target:  5'- cGUCGCUcCCCGGGUCCGuGuAGCCc- -3'
miRNA:   3'- uCAGUGGcGGGUCCAGGCuC-UCGGag -5'
3611 3' -60.8 NC_001650.1 + 81611 0.67 0.703717
Target:  5'- aGGUCGCCGCaCAGGgcgcgcgCCGcgcGGGCCa- -3'
miRNA:   3'- -UCAGUGGCGgGUCCa------GGCu--CUCGGag -5'
3611 3' -60.8 NC_001650.1 + 90428 0.67 0.664835
Target:  5'- cGUCGaagcucgCGUCCGGGUCCGAGcacAGCUUg -3'
miRNA:   3'- uCAGUg------GCGGGUCCAGGCUC---UCGGAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.