miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3611 3' -60.8 NC_001650.1 + 29807 1.08 0.001372
Target:  5'- cAGUCACCGCCCAGGUCCGAGAGCCUCu -3'
miRNA:   3'- -UCAGUGGCGGGUCCAGGCUCUCGGAG- -5'
3611 3' -60.8 NC_001650.1 + 127614 0.76 0.217142
Target:  5'- -cUCGCUGCCCAGGUCCGGGc-UCUCg -3'
miRNA:   3'- ucAGUGGCGGGUCCAGGCUCucGGAG- -5'
3611 3' -60.8 NC_001650.1 + 26849 0.76 0.227592
Target:  5'- ---uGCUGCCCGGGgCCGAGAGCCa- -3'
miRNA:   3'- ucagUGGCGGGUCCaGGCUCUCGGag -5'
3611 3' -60.8 NC_001650.1 + 53004 0.76 0.238464
Target:  5'- cGUcCugCGCCCGGGccCCGAGGGCCg- -3'
miRNA:   3'- uCA-GugGCGGGUCCa-GGCUCUCGGag -5'
3611 3' -60.8 NC_001650.1 + 141465 0.72 0.395687
Target:  5'- -cUCGCCGCCgCGGGgCCGAGGGCg-- -3'
miRNA:   3'- ucAGUGGCGG-GUCCaGGCUCUCGgag -5'
3611 3' -60.8 NC_001650.1 + 80905 0.72 0.420565
Target:  5'- cGUCGCUcCCCGGGUCCGuGuAGCCc- -3'
miRNA:   3'- uCAGUGGcGGGUCCAGGCuC-UCGGag -5'
3611 3' -60.8 NC_001650.1 + 80668 0.71 0.429064
Target:  5'- cGGcCuCC-CCCAGGUCCGAGAGCg-- -3'
miRNA:   3'- -UCaGuGGcGGGUCCAGGCUCUCGgag -5'
3611 3' -60.8 NC_001650.1 + 28250 0.71 0.429064
Target:  5'- -cUCGCagauGCCCGccUCCGAGAGCCUCu -3'
miRNA:   3'- ucAGUGg---CGGGUccAGGCUCUCGGAG- -5'
3611 3' -60.8 NC_001650.1 + 109690 0.7 0.491229
Target:  5'- ---aGCUGCCCAGGUCCuacGAGAGgCCa- -3'
miRNA:   3'- ucagUGGCGGGUCCAGG---CUCUC-GGag -5'
3611 3' -60.8 NC_001650.1 + 134352 0.7 0.491229
Target:  5'- cGGUCGCC-CCCuuGGUCUGGucGGGUCUCa -3'
miRNA:   3'- -UCAGUGGcGGGu-CCAGGCU--CUCGGAG- -5'
3611 3' -60.8 NC_001650.1 + 162542 0.7 0.500455
Target:  5'- cAGUCACUgcaGCCCAGG-CCccGGGCCUg -3'
miRNA:   3'- -UCAGUGG---CGGGUCCaGGcuCUCGGAg -5'
3611 3' -60.8 NC_001650.1 + 54437 0.7 0.500455
Target:  5'- --gCACC-CCUAGGUucgCCGGGAGCCUg -3'
miRNA:   3'- ucaGUGGcGGGUCCA---GGCUCUCGGAg -5'
3611 3' -60.8 NC_001650.1 + 127406 0.7 0.500455
Target:  5'- --cCGCCGCCCGGGagaCCG-GGGCCg- -3'
miRNA:   3'- ucaGUGGCGGGUCCa--GGCuCUCGGag -5'
3611 3' -60.8 NC_001650.1 + 27691 0.7 0.51913
Target:  5'- cGcCGCCGCCCcGGUUgGAG-GCCUg -3'
miRNA:   3'- uCaGUGGCGGGuCCAGgCUCuCGGAg -5'
3611 3' -60.8 NC_001650.1 + 146881 0.7 0.52857
Target:  5'- aAGUCACCGCgCCGGGcCCGuc-GCC-Cg -3'
miRNA:   3'- -UCAGUGGCG-GGUCCaGGCucuCGGaG- -5'
3611 3' -60.8 NC_001650.1 + 121386 0.69 0.56691
Target:  5'- uGGcCAUCGCCCcGG-CCGGGGgcgccGCCUCg -3'
miRNA:   3'- -UCaGUGGCGGGuCCaGGCUCU-----CGGAG- -5'
3611 3' -60.8 NC_001650.1 + 131013 0.69 0.576615
Target:  5'- ---gACCG-CCAGGUCCGGGGcguccagcGCCUCc -3'
miRNA:   3'- ucagUGGCgGGUCCAGGCUCU--------CGGAG- -5'
3611 3' -60.8 NC_001650.1 + 94680 0.69 0.576615
Target:  5'- gAGgagCGCCGCCUcGGUCugguCGAGGGCgUCc -3'
miRNA:   3'- -UCa--GUGGCGGGuCCAG----GCUCUCGgAG- -5'
3611 3' -60.8 NC_001650.1 + 136619 0.69 0.586355
Target:  5'- --cCACCGCCCGGGggcgUCGGGGcGCCc- -3'
miRNA:   3'- ucaGUGGCGGGUCCa---GGCUCU-CGGag -5'
3611 3' -60.8 NC_001650.1 + 48200 0.68 0.600042
Target:  5'- cGGUCAaCGCCCuggagaugagcAGGaacgggcugcacaugUCCGAGGGUCUCg -3'
miRNA:   3'- -UCAGUgGCGGG-----------UCC---------------AGGCUCUCGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.