miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3611 3' -60.8 NC_001650.1 + 26849 0.76 0.227592
Target:  5'- ---uGCUGCCCGGGgCCGAGAGCCa- -3'
miRNA:   3'- ucagUGGCGGGUCCaGGCUCUCGGag -5'
3611 3' -60.8 NC_001650.1 + 156870 0.67 0.703717
Target:  5'- cGGgggCAUCGgCCAGc-UCGAGAGCCUCc -3'
miRNA:   3'- -UCa--GUGGCgGGUCcaGGCUCUCGGAG- -5'
3611 3' -60.8 NC_001650.1 + 27454 0.66 0.741707
Target:  5'- cGGUgcugUACCugGCCCGGGUCCaGAagcaGGCCUCc -3'
miRNA:   3'- -UCA----GUGG--CGGGUCCAGG-CUc---UCGGAG- -5'
3611 3' -60.8 NC_001650.1 + 703 0.66 0.741707
Target:  5'- ---gGCCGCCCAuuGG-CCGAGAGgaguccCCUCc -3'
miRNA:   3'- ucagUGGCGGGU--CCaGGCUCUC------GGAG- -5'
3611 3' -60.8 NC_001650.1 + 167410 0.66 0.741707
Target:  5'- ---gGCCGCCCAuuGG-CCGAGAGgaguccCCUCc -3'
miRNA:   3'- ucagUGGCGGGU--CCaGGCUCUC------GGAG- -5'
3611 3' -60.8 NC_001650.1 + 142890 0.66 0.741707
Target:  5'- cGcCGCCGCCCcGGcCCGuGcAGCCg- -3'
miRNA:   3'- uCaGUGGCGGGuCCaGGCuC-UCGGag -5'
3611 3' -60.8 NC_001650.1 + 141664 0.66 0.751004
Target:  5'- --aCACC-CCCAGGccCCGAGGcCCUCc -3'
miRNA:   3'- ucaGUGGcGGGUCCa-GGCUCUcGGAG- -5'
3611 3' -60.8 NC_001650.1 + 155795 0.66 0.751004
Target:  5'- --cCGCCGCCCGGGggaCCuguaGAGGGUCa- -3'
miRNA:   3'- ucaGUGGCGGGUCCa--GG----CUCUCGGag -5'
3611 3' -60.8 NC_001650.1 + 145450 0.66 0.757455
Target:  5'- aAGUCAucuauguccuccacCCGCCuCAGGaUCCu-GAGCCUg -3'
miRNA:   3'- -UCAGU--------------GGCGG-GUCC-AGGcuCUCGGAg -5'
3611 3' -60.8 NC_001650.1 + 81611 0.67 0.703717
Target:  5'- aGGUCGCCGCaCAGGgcgcgcgCCGcgcGGGCCa- -3'
miRNA:   3'- -UCAGUGGCGgGUCCa------GGCu--CUCGGag -5'
3611 3' -60.8 NC_001650.1 + 114829 0.67 0.694061
Target:  5'- cAGUagGCUGUCCAGGcugacgUCGuGGGCCUCg -3'
miRNA:   3'- -UCAg-UGGCGGGUCCa-----GGCuCUCGGAG- -5'
3611 3' -60.8 NC_001650.1 + 130250 0.67 0.684356
Target:  5'- gGGUCACCGagaacauaaacuCCCuGGagUCGAGGGCCa- -3'
miRNA:   3'- -UCAGUGGC------------GGGuCCa-GGCUCUCGGag -5'
3611 3' -60.8 NC_001650.1 + 109690 0.7 0.491229
Target:  5'- ---aGCUGCCCAGGUCCuacGAGAGgCCa- -3'
miRNA:   3'- ucagUGGCGGGUCCAGG---CUCUC-GGag -5'
3611 3' -60.8 NC_001650.1 + 162542 0.7 0.500455
Target:  5'- cAGUCACUgcaGCCCAGG-CCccGGGCCUg -3'
miRNA:   3'- -UCAGUGG---CGGGUCCaGGcuCUCGGAg -5'
3611 3' -60.8 NC_001650.1 + 121386 0.69 0.56691
Target:  5'- uGGcCAUCGCCCcGG-CCGGGGgcgccGCCUCg -3'
miRNA:   3'- -UCaGUGGCGGGuCCaGGCUCU-----CGGAG- -5'
3611 3' -60.8 NC_001650.1 + 136619 0.69 0.586355
Target:  5'- --cCACCGCCCGGGggcgUCGGGGcGCCc- -3'
miRNA:   3'- ucaGUGGCGGGUCCa---GGCUCU-CGGag -5'
3611 3' -60.8 NC_001650.1 + 48200 0.68 0.600042
Target:  5'- cGGUCAaCGCCCuggagaugagcAGGaacgggcugcacaugUCCGAGGGUCUCg -3'
miRNA:   3'- -UCAGUgGCGGG-----------UCC---------------AGGCUCUCGGAG- -5'
3611 3' -60.8 NC_001650.1 + 46321 0.68 0.605922
Target:  5'- aAGUCAUCGCgCCGGG-CCGGGcGCUc- -3'
miRNA:   3'- -UCAGUGGCG-GGUCCaGGCUCuCGGag -5'
3611 3' -60.8 NC_001650.1 + 156268 0.68 0.605922
Target:  5'- cGGUCACCaGCCCGcGGgccaCC-AGGGCCUg -3'
miRNA:   3'- -UCAGUGG-CGGGU-CCa---GGcUCUCGGAg -5'
3611 3' -60.8 NC_001650.1 + 90428 0.67 0.664835
Target:  5'- cGUCGaagcucgCGUCCGGGUCCGAGcacAGCUUg -3'
miRNA:   3'- uCAGUg------GCGGGUCCAGGCUC---UCGGAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.