miRNA display CGI


Results 21 - 40 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3611 3' -60.8 NC_001650.1 + 131013 0.69 0.576615
Target:  5'- ---gACCG-CCAGGUCCGGGGcguccagcGCCUCc -3'
miRNA:   3'- ucagUGGCgGGUCCAGGCUCU--------CGGAG- -5'
3611 3' -60.8 NC_001650.1 + 94680 0.69 0.576615
Target:  5'- gAGgagCGCCGCCUcGGUCugguCGAGGGCgUCc -3'
miRNA:   3'- -UCa--GUGGCGGGuCCAG----GCUCUCGgAG- -5'
3611 3' -60.8 NC_001650.1 + 125233 0.68 0.604941
Target:  5'- cGUCcuCCGCCCccGGGaCCcccucuggcgaucGAGAGCCUCu -3'
miRNA:   3'- uCAGu-GGCGGG--UCCaGG-------------CUCUCGGAG- -5'
3611 3' -60.8 NC_001650.1 + 49507 0.68 0.615735
Target:  5'- cGGUCACgcuggccaGCuCCAGGcCCGGGGGCagCUCg -3'
miRNA:   3'- -UCAGUGg-------CG-GGUCCaGGCUCUCG--GAG- -5'
3611 3' -60.8 NC_001650.1 + 165016 0.68 0.615735
Target:  5'- gGGUCugcucgcgGCCGCCgGcGG-CUGAGAGCUUCu -3'
miRNA:   3'- -UCAG--------UGGCGGgU-CCaGGCUCUCGGAG- -5'
3611 3' -60.8 NC_001650.1 + 37088 0.68 0.645217
Target:  5'- uAGUCGCCcgGCCCgAGGUgCGGGugcaggcacAGCCUg -3'
miRNA:   3'- -UCAGUGG--CGGG-UCCAgGCUC---------UCGGAg -5'
3611 3' -60.8 NC_001650.1 + 121868 0.67 0.664835
Target:  5'- aGGUgGCCG-CCAGGUCguccucgGGGGGCCUg -3'
miRNA:   3'- -UCAgUGGCgGGUCCAGg------CUCUCGGAg -5'
3611 3' -60.8 NC_001650.1 + 121784 0.67 0.664835
Target:  5'- --cCGCCGCCCccgcGGUCCaGGGGGUCg- -3'
miRNA:   3'- ucaGUGGCGGGu---CCAGG-CUCUCGGag -5'
3611 3' -60.8 NC_001650.1 + 134926 0.67 0.703717
Target:  5'- gGGUCcgccucugcaGCCGCCUcuGGGgcaUCCGGGgggucAGCCUCu -3'
miRNA:   3'- -UCAG----------UGGCGGG--UCC---AGGCUC-----UCGGAG- -5'
3611 3' -60.8 NC_001650.1 + 146881 0.7 0.52857
Target:  5'- aAGUCACCGCgCCGGGcCCGuc-GCC-Cg -3'
miRNA:   3'- -UCAGUGGCG-GGUCCaGGCucuCGGaG- -5'
3611 3' -60.8 NC_001650.1 + 27691 0.7 0.51913
Target:  5'- cGcCGCCGCCCcGGUUgGAG-GCCUg -3'
miRNA:   3'- uCaGUGGCGGGuCCAGgCUCuCGGAg -5'
3611 3' -60.8 NC_001650.1 + 127406 0.7 0.500455
Target:  5'- --cCGCCGCCCGGGagaCCG-GGGCCg- -3'
miRNA:   3'- ucaGUGGCGGGUCCa--GGCuCUCGGag -5'
3611 3' -60.8 NC_001650.1 + 127614 0.76 0.217142
Target:  5'- -cUCGCUGCCCAGGUCCGGGc-UCUCg -3'
miRNA:   3'- ucAGUGGCGGGUCCAGGCUCucGGAG- -5'
3611 3' -60.8 NC_001650.1 + 53004 0.76 0.238464
Target:  5'- cGUcCugCGCCCGGGccCCGAGGGCCg- -3'
miRNA:   3'- uCA-GugGCGGGUCCa-GGCUCUCGGag -5'
3611 3' -60.8 NC_001650.1 + 141465 0.72 0.395687
Target:  5'- -cUCGCCGCCgCGGGgCCGAGGGCg-- -3'
miRNA:   3'- ucAGUGGCGG-GUCCaGGCUCUCGgag -5'
3611 3' -60.8 NC_001650.1 + 80905 0.72 0.420565
Target:  5'- cGUCGCUcCCCGGGUCCGuGuAGCCc- -3'
miRNA:   3'- uCAGUGGcGGGUCCAGGCuC-UCGGag -5'
3611 3' -60.8 NC_001650.1 + 80668 0.71 0.429064
Target:  5'- cGGcCuCC-CCCAGGUCCGAGAGCg-- -3'
miRNA:   3'- -UCaGuGGcGGGUCCAGGCUCUCGgag -5'
3611 3' -60.8 NC_001650.1 + 28250 0.71 0.429064
Target:  5'- -cUCGCagauGCCCGccUCCGAGAGCCUCu -3'
miRNA:   3'- ucAGUGg---CGGGUccAGGCUCUCGGAG- -5'
3611 3' -60.8 NC_001650.1 + 134352 0.7 0.491229
Target:  5'- cGGUCGCC-CCCuuGGUCUGGucGGGUCUCa -3'
miRNA:   3'- -UCAGUGGcGGGu-CCAGGCU--CUCGGAG- -5'
3611 3' -60.8 NC_001650.1 + 54437 0.7 0.500455
Target:  5'- --gCACC-CCUAGGUucgCCGGGAGCCUg -3'
miRNA:   3'- ucaGUGGcGGGUCCA---GGCUCUCGGAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.