miRNA display CGI


Results 1 - 20 of 42 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3612 5' -54.3 NC_001650.1 + 31175 1.09 0.003846
Target:  5'- gUGCGCAAACAGCUUGGCCAUGUGGGAg -3'
miRNA:   3'- -ACGCGUUUGUCGAACCGGUACACCCU- -5'
3612 5' -54.3 NC_001650.1 + 85007 0.82 0.217676
Target:  5'- aGCGCAuggcgGGCAGCUUGGCCAccgcGUGGGc -3'
miRNA:   3'- aCGCGU-----UUGUCGAACCGGUa---CACCCu -5'
3612 5' -54.3 NC_001650.1 + 178328 0.82 0.234485
Target:  5'- gGCGC--GCGGCgagagGGCCGUGUGGGGa -3'
miRNA:   3'- aCGCGuuUGUCGaa---CCGGUACACCCU- -5'
3612 5' -54.3 NC_001650.1 + 11621 0.82 0.234485
Target:  5'- gGCGC--GCGGCgagagGGCCGUGUGGGGa -3'
miRNA:   3'- aCGCGuuUGUCGaa---CCGGUACACCCU- -5'
3612 5' -54.3 NC_001650.1 + 70834 0.76 0.473593
Target:  5'- aUGCGCAAGCuGC-UGGCCAUGcUGGc- -3'
miRNA:   3'- -ACGCGUUUGuCGaACCGGUAC-ACCcu -5'
3612 5' -54.3 NC_001650.1 + 142406 0.76 0.492873
Target:  5'- gGCGCAcucgAGCAGCgccgcgugggUGGCCGUcagcGUGGGAc -3'
miRNA:   3'- aCGCGU----UUGUCGa---------ACCGGUA----CACCCU- -5'
3612 5' -54.3 NC_001650.1 + 98068 0.75 0.552671
Target:  5'- gGCGCGAggggGCAGCUggUGGCCGUGacccGGGc -3'
miRNA:   3'- aCGCGUU----UGUCGA--ACCGGUACa---CCCu -5'
3612 5' -54.3 NC_001650.1 + 79092 0.72 0.676719
Target:  5'- cUGCGCAccuuCAGggUGGCUAuguUGUGGGGg -3'
miRNA:   3'- -ACGCGUuu--GUCgaACCGGU---ACACCCU- -5'
3612 5' -54.3 NC_001650.1 + 73192 0.72 0.687016
Target:  5'- gGCGCAggAGCGcGCguacugGGCCAUGgGGGAc -3'
miRNA:   3'- aCGCGU--UUGU-CGaa----CCGGUACaCCCU- -5'
3612 5' -54.3 NC_001650.1 + 121120 0.72 0.697265
Target:  5'- aGCGCGcGCAGCUcgcGGCgGUGcuUGGGGg -3'
miRNA:   3'- aCGCGUuUGUCGAa--CCGgUAC--ACCCU- -5'
3612 5' -54.3 NC_001650.1 + 80589 0.72 0.717585
Target:  5'- gGCGCGgaGAUGGCg-GGCUcgGUGGGGa -3'
miRNA:   3'- aCGCGU--UUGUCGaaCCGGuaCACCCU- -5'
3612 5' -54.3 NC_001650.1 + 48493 0.71 0.757244
Target:  5'- gGC-CAc-CAGCUUGGCCcUGUGGGc -3'
miRNA:   3'- aCGcGUuuGUCGAACCGGuACACCCu -5'
3612 5' -54.3 NC_001650.1 + 22631 0.71 0.757244
Target:  5'- cGCGCccGAGCAcCUcugGGCCAgcaUGUGGGAc -3'
miRNA:   3'- aCGCG--UUUGUcGAa--CCGGU---ACACCCU- -5'
3612 5' -54.3 NC_001650.1 + 51624 0.71 0.757244
Target:  5'- cGCGCGGGCAGCa-GGuucaCCAUG-GGGAu -3'
miRNA:   3'- aCGCGUUUGUCGaaCC----GGUACaCCCU- -5'
3612 5' -54.3 NC_001650.1 + 121947 0.7 0.801466
Target:  5'- cGCGCGGGCcgugcugcuccccgAGCUggaGGCCAUGcugcgGGGGc -3'
miRNA:   3'- aCGCGUUUG--------------UCGAa--CCGGUACa----CCCU- -5'
3612 5' -54.3 NC_001650.1 + 48854 0.7 0.80418
Target:  5'- -uCGCAGACAucauGC-UGGCCAUGaacgGGGAg -3'
miRNA:   3'- acGCGUUUGU----CGaACCGGUACa---CCCU- -5'
3612 5' -54.3 NC_001650.1 + 165494 0.69 0.830488
Target:  5'- gGgGCGGugAGCUUcuGCCAccuucUGUGGGAa -3'
miRNA:   3'- aCgCGUUugUCGAAc-CGGU-----ACACCCU- -5'
3612 5' -54.3 NC_001650.1 + 143898 0.69 0.862926
Target:  5'- uUGCGC-GACAGCUUGGaCCucuUGGaGAg -3'
miRNA:   3'- -ACGCGuUUGUCGAACC-GGuacACC-CU- -5'
3612 5' -54.3 NC_001650.1 + 122306 0.69 0.870516
Target:  5'- cGCGCGAGCAGCU-GGCCGccGcGGc- -3'
miRNA:   3'- aCGCGUUUGUCGAaCCGGUa-CaCCcu -5'
3612 5' -54.3 NC_001650.1 + 131851 0.68 0.885028
Target:  5'- cGCGCAGGCaggcggccgccAGCUcgGGCCggGUGGc- -3'
miRNA:   3'- aCGCGUUUG-----------UCGAa-CCGGuaCACCcu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.