Results 1 - 20 of 42 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3612 | 5' | -54.3 | NC_001650.1 | + | 11621 | 0.82 | 0.234485 |
Target: 5'- gGCGC--GCGGCgagagGGCCGUGUGGGGa -3' miRNA: 3'- aCGCGuuUGUCGaa---CCGGUACACCCU- -5' |
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3612 | 5' | -54.3 | NC_001650.1 | + | 15264 | 0.66 | 0.955991 |
Target: 5'- gGUuCAAcaAGCgagUGGCCAgGUGGGAg -3' miRNA: 3'- aCGcGUUugUCGa--ACCGGUaCACCCU- -5' |
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3612 | 5' | -54.3 | NC_001650.1 | + | 21755 | 0.66 | 0.95976 |
Target: 5'- gGgGCAgcAACAGCUgcgGcGCCcccugGUGGGGg -3' miRNA: 3'- aCgCGU--UUGUCGAa--C-CGGua---CACCCU- -5' |
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3612 | 5' | -54.3 | NC_001650.1 | + | 22631 | 0.71 | 0.757244 |
Target: 5'- cGCGCccGAGCAcCUcugGGCCAgcaUGUGGGAc -3' miRNA: 3'- aCGCG--UUUGUcGAa--CCGGU---ACACCCU- -5' |
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3612 | 5' | -54.3 | NC_001650.1 | + | 24069 | 0.66 | 0.95976 |
Target: 5'- gGCcuGUggGCGGCccuggccgagaUGGCCAUGgcgGGGAu -3' miRNA: 3'- aCG--CGuuUGUCGa----------ACCGGUACa--CCCU- -5' |
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3612 | 5' | -54.3 | NC_001650.1 | + | 29052 | 0.68 | 0.891939 |
Target: 5'- gGCGCGGGgGGU--GGCCGacGUGGGGg -3' miRNA: 3'- aCGCGUUUgUCGaaCCGGUa-CACCCU- -5' |
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3612 | 5' | -54.3 | NC_001650.1 | + | 31175 | 1.09 | 0.003846 |
Target: 5'- gUGCGCAAACAGCUUGGCCAUGUGGGAg -3' miRNA: 3'- -ACGCGUUUGUCGAACCGGUACACCCU- -5' |
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3612 | 5' | -54.3 | NC_001650.1 | + | 37586 | 0.67 | 0.931526 |
Target: 5'- gGUGCGGGCGGCggccgagcgccugUGcGCCAUGaGGGu -3' miRNA: 3'- aCGCGUUUGUCGa------------AC-CGGUACaCCCu -5' |
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3612 | 5' | -54.3 | NC_001650.1 | + | 48108 | 0.67 | 0.933582 |
Target: 5'- gGUGUAcAGCAGgaUGGCCAg--GGGGu -3' miRNA: 3'- aCGCGU-UUGUCgaACCGGUacaCCCU- -5' |
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3612 | 5' | -54.3 | NC_001650.1 | + | 48493 | 0.71 | 0.757244 |
Target: 5'- gGC-CAc-CAGCUUGGCCcUGUGGGc -3' miRNA: 3'- aCGcGUuuGUCGAACCGGuACACCCu -5' |
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3612 | 5' | -54.3 | NC_001650.1 | + | 48854 | 0.7 | 0.80418 |
Target: 5'- -uCGCAGACAucauGC-UGGCCAUGaacgGGGAg -3' miRNA: 3'- acGCGUUUGU----CGaACCGGUACa---CCCU- -5' |
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3612 | 5' | -54.3 | NC_001650.1 | + | 51437 | 0.67 | 0.933072 |
Target: 5'- cGCGCuacagggaGAACcugAGCgUGGCCGUcacggugGUGGGAg -3' miRNA: 3'- aCGCG--------UUUG---UCGaACCGGUA-------CACCCU- -5' |
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3612 | 5' | -54.3 | NC_001650.1 | + | 51624 | 0.71 | 0.757244 |
Target: 5'- cGCGCGGGCAGCa-GGuucaCCAUG-GGGAu -3' miRNA: 3'- aCGCGUUUGUCGaaCC----GGUACaCCCU- -5' |
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3612 | 5' | -54.3 | NC_001650.1 | + | 53722 | 0.67 | 0.922349 |
Target: 5'- aGCGCGgccgaGAgGGCUcUGGaCCAaucagauUGUGGGAu -3' miRNA: 3'- aCGCGU-----UUgUCGA-ACC-GGU-------ACACCCU- -5' |
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3612 | 5' | -54.3 | NC_001650.1 | + | 55025 | 0.68 | 0.885028 |
Target: 5'- cGCGCGAGCcggguccagaaGGCUaGGCCAaaauccgaggGUGGGu -3' miRNA: 3'- aCGCGUUUG-----------UCGAaCCGGUa---------CACCCu -5' |
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3612 | 5' | -54.3 | NC_001650.1 | + | 68643 | 0.66 | 0.950743 |
Target: 5'- gUGCGCcAGCGGCacGGCCAUcaacaugaacaucaGcgGGGAc -3' miRNA: 3'- -ACGCGuUUGUCGaaCCGGUA--------------Ca-CCCU- -5' |
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3612 | 5' | -54.3 | NC_001650.1 | + | 69225 | 0.66 | 0.955991 |
Target: 5'- cGCGCGGGC-GCUggaGGCCGg--GGGc -3' miRNA: 3'- aCGCGUUUGuCGAa--CCGGUacaCCCu -5' |
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3612 | 5' | -54.3 | NC_001650.1 | + | 70834 | 0.76 | 0.473593 |
Target: 5'- aUGCGCAAGCuGC-UGGCCAUGcUGGc- -3' miRNA: 3'- -ACGCGUUUGuCGaACCGGUAC-ACCcu -5' |
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3612 | 5' | -54.3 | NC_001650.1 | + | 72699 | 0.66 | 0.958653 |
Target: 5'- cUGgGCAGGCGGUcgccacccacgagagGGCCAagcugGUGGGGc -3' miRNA: 3'- -ACgCGUUUGUCGaa-------------CCGGUa----CACCCU- -5' |
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3612 | 5' | -54.3 | NC_001650.1 | + | 72933 | 0.66 | 0.94775 |
Target: 5'- aGCGUcugccccacCAGCUUGGCCcucucGUGGGu -3' miRNA: 3'- aCGCGuuu------GUCGAACCGGua---CACCCu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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