miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3613 3' -55.6 NC_001650.1 + 131635 0.66 0.945069
Target:  5'- aCCCGGcCCGA---GCUGGCggccGCCUGc- -3'
miRNA:   3'- -GGGUCuGGCUguuUGACCG----CGGACuu -5'
3613 3' -55.6 NC_001650.1 + 109088 0.66 0.945069
Target:  5'- -gCGGAgCGACGuGCUGaGCGuCCUGGg -3'
miRNA:   3'- ggGUCUgGCUGUuUGAC-CGC-GGACUu -5'
3613 3' -55.6 NC_001650.1 + 26925 0.66 0.945069
Target:  5'- gCCGGGcCCGGCGAAgaUGG-GCUUGAAg -3'
miRNA:   3'- gGGUCU-GGCUGUUUg-ACCgCGGACUU- -5'
3613 3' -55.6 NC_001650.1 + 120689 0.66 0.945069
Target:  5'- cCUCAGGagguagaaGGCGGGCcGGUGCCUGAu -3'
miRNA:   3'- -GGGUCUgg------CUGUUUGaCCGCGGACUu -5'
3613 3' -55.6 NC_001650.1 + 58298 0.66 0.940535
Target:  5'- gCCCAGGCCccGGCGGGC-GGCuGCgaGGAu -3'
miRNA:   3'- -GGGUCUGG--CUGUUUGaCCG-CGgaCUU- -5'
3613 3' -55.6 NC_001650.1 + 130892 0.66 0.940535
Target:  5'- cCCCgAGACCcACGAGCgGGU-CCUGGAg -3'
miRNA:   3'- -GGG-UCUGGcUGUUUGaCCGcGGACUU- -5'
3613 3' -55.6 NC_001650.1 + 98166 0.66 0.935766
Target:  5'- cCCCGGGuCCGACucggaggagGAAgaGGUccGCCUGGAg -3'
miRNA:   3'- -GGGUCU-GGCUG---------UUUgaCCG--CGGACUU- -5'
3613 3' -55.6 NC_001650.1 + 27535 0.66 0.935766
Target:  5'- --uGGGCC-ACGGGCUGGCcuGCCUGGc -3'
miRNA:   3'- gggUCUGGcUGUUUGACCG--CGGACUu -5'
3613 3' -55.6 NC_001650.1 + 49893 0.66 0.935766
Target:  5'- aUCAGGCgGGCGAcCUGGcCGcCCUGGc -3'
miRNA:   3'- gGGUCUGgCUGUUuGACC-GC-GGACUu -5'
3613 3' -55.6 NC_001650.1 + 146150 0.66 0.930761
Target:  5'- gCCCGGGCCGG---GCUGGgGCacagGGAg -3'
miRNA:   3'- -GGGUCUGGCUguuUGACCgCGga--CUU- -5'
3613 3' -55.6 NC_001650.1 + 49294 0.66 0.930761
Target:  5'- cCCCGGGCCug-GAGCUGGCcaGCgUGAc -3'
miRNA:   3'- -GGGUCUGGcugUUUGACCG--CGgACUu -5'
3613 3' -55.6 NC_001650.1 + 165151 0.66 0.920038
Target:  5'- gCCGGACCGGgGAGCcGGgGUgaGAGa -3'
miRNA:   3'- gGGUCUGGCUgUUUGaCCgCGgaCUU- -5'
3613 3' -55.6 NC_001650.1 + 125934 0.66 0.920038
Target:  5'- gCCCGGuuuuucugGCCGAgGcGCcGGCGUCUGGGa -3'
miRNA:   3'- -GGGUC--------UGGCUgUuUGaCCGCGGACUU- -5'
3613 3' -55.6 NC_001650.1 + 157618 0.66 0.918348
Target:  5'- aCCCAGAUgGGCAuGugUGGaagcgaaaccgaccUGCCUGGAc -3'
miRNA:   3'- -GGGUCUGgCUGU-UugACC--------------GCGGACUU- -5'
3613 3' -55.6 NC_001650.1 + 69162 0.67 0.902184
Target:  5'- gCCAGGCCgGGCAGGgUGGUaGCCagGGAg -3'
miRNA:   3'- gGGUCUGG-CUGUUUgACCG-CGGa-CUU- -5'
3613 3' -55.6 NC_001650.1 + 109360 0.67 0.902184
Target:  5'- gCCCGGGCCucccggacGCGGACgGGCcCCUGGAc -3'
miRNA:   3'- -GGGUCUGGc-------UGUUUGaCCGcGGACUU- -5'
3613 3' -55.6 NC_001650.1 + 24999 0.67 0.889121
Target:  5'- cCCCGGaguGCCugGACAGGCUGGUgGCCUcGGg -3'
miRNA:   3'- -GGGUC---UGG--CUGUUUGACCG-CGGA-CUu -5'
3613 3' -55.6 NC_001650.1 + 156434 0.67 0.882252
Target:  5'- cCCCGGGCCGuGC-AGCUcgGGCgugaGCCUGGGg -3'
miRNA:   3'- -GGGUCUGGC-UGuUUGA--CCG----CGGACUU- -5'
3613 3' -55.6 NC_001650.1 + 111740 0.68 0.875161
Target:  5'- aCCCAGGugguguuuCUaGAgGAGCUGuGCGCCUGGg -3'
miRNA:   3'- -GGGUCU--------GG-CUgUUUGAC-CGCGGACUu -5'
3613 3' -55.6 NC_001650.1 + 154352 0.68 0.867855
Target:  5'- cUCCAGGucuuCCaGCAGACUGGCcaGUCUGAGg -3'
miRNA:   3'- -GGGUCU----GGcUGUUUGACCG--CGGACUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.