miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3615 3' -58.5 NC_001650.1 + 128046 0.66 0.847488
Target:  5'- gUGGAGGG-CAGGGagaCGguGGCGg--- -3'
miRNA:   3'- -ACCUUCCaGUCCCg--GUguCCGCacac -5'
3615 3' -58.5 NC_001650.1 + 146091 0.66 0.847488
Target:  5'- gUGGAGGcacuUCGGGGCCGCGuaCGUGg- -3'
miRNA:   3'- -ACCUUCc---AGUCCCGGUGUccGCACac -5'
3615 3' -58.5 NC_001650.1 + 21521 0.66 0.847488
Target:  5'- cGGggGGgCuacugcugggAGGGCCGCGGcuGCG-GUGg -3'
miRNA:   3'- aCCuuCCaG----------UCCCGGUGUC--CGCaCAC- -5'
3615 3' -58.5 NC_001650.1 + 98017 0.66 0.847488
Target:  5'- gGGAcgaGGGUCacgaaGGGGCCGUGGGCG-GUu -3'
miRNA:   3'- aCCU---UCCAG-----UCCCGGUGUCCGCaCAc -5'
3615 3' -58.5 NC_001650.1 + 64018 0.66 0.846706
Target:  5'- cGGAguuuucaGGGUCuccGGGGUCGCGGGCa---- -3'
miRNA:   3'- aCCU-------UCCAG---UCCCGGUGUCCGcacac -5'
3615 3' -58.5 NC_001650.1 + 111538 0.66 0.839587
Target:  5'- aGGAuGGgCAGGGCCucCAGGgGaaaggGUGg -3'
miRNA:   3'- aCCUuCCaGUCCCGGu-GUCCgCa----CAC- -5'
3615 3' -58.5 NC_001650.1 + 59964 0.66 0.831505
Target:  5'- gUGGggGGcgCcucgcccccgGGGGCCACGGGCc---- -3'
miRNA:   3'- -ACCuuCCa-G----------UCCCGGUGUCCGcacac -5'
3615 3' -58.5 NC_001650.1 + 122290 0.66 0.831505
Target:  5'- cUGGAaguAGGcCAGGGUCAgGgGGCGccugaUGUGg -3'
miRNA:   3'- -ACCU---UCCaGUCCCGGUgU-CCGC-----ACAC- -5'
3615 3' -58.5 NC_001650.1 + 136627 0.66 0.823249
Target:  5'- cGGggGcGUCGGGGCgcccugaggcucCGCGGGCagaGUGc -3'
miRNA:   3'- aCCuuC-CAGUCCCG------------GUGUCCGca-CAC- -5'
3615 3' -58.5 NC_001650.1 + 46610 0.66 0.823249
Target:  5'- aUGGAGcGGagGGGGCCGCcgcGGCGcaucugGUGc -3'
miRNA:   3'- -ACCUU-CCagUCCCGGUGu--CCGCa-----CAC- -5'
3615 3' -58.5 NC_001650.1 + 57553 0.66 0.823249
Target:  5'- cGGccaccAGG-CGGcGCCACAGGCGgGUGg -3'
miRNA:   3'- aCCu----UCCaGUCcCGGUGUCCGCaCAC- -5'
3615 3' -58.5 NC_001650.1 + 168500 0.66 0.82074
Target:  5'- aUGGAgugAGGUaggcaguugccaggCAGGGUCugGGGUGgggGUGc -3'
miRNA:   3'- -ACCU---UCCA--------------GUCCCGGugUCCGCa--CAC- -5'
3615 3' -58.5 NC_001650.1 + 145738 0.66 0.814827
Target:  5'- aGGgcGG-CAGGGCCAU-GGCGg--- -3'
miRNA:   3'- aCCuuCCaGUCCCGGUGuCCGCacac -5'
3615 3' -58.5 NC_001650.1 + 22240 0.67 0.797514
Target:  5'- uUGGGguGGGcCAGGGCCgggacgggcacGCGGGCGa--- -3'
miRNA:   3'- -ACCU--UCCaGUCCCGG-----------UGUCCGCacac -5'
3615 3' -58.5 NC_001650.1 + 130709 0.67 0.797514
Target:  5'- aGGGAGG-CGGGGCaCAgGGGCa---- -3'
miRNA:   3'- aCCUUCCaGUCCCG-GUgUCCGcacac -5'
3615 3' -58.5 NC_001650.1 + 52715 0.67 0.788639
Target:  5'- gGGAGacGGUCcagGGGGCCACGguGGCG-GUc -3'
miRNA:   3'- aCCUU--CCAG---UCCCGGUGU--CCGCaCAc -5'
3615 3' -58.5 NC_001650.1 + 127570 0.67 0.779629
Target:  5'- aGGggGGcgaccgccCAGGGCCAgGGG-GUGg- -3'
miRNA:   3'- aCCuuCCa-------GUCCCGGUgUCCgCACac -5'
3615 3' -58.5 NC_001650.1 + 60178 0.67 0.770492
Target:  5'- aGGGAGGaggcCGGGGUCuGCGGGCGgcggGUc -3'
miRNA:   3'- aCCUUCCa---GUCCCGG-UGUCCGCa---CAc -5'
3615 3' -58.5 NC_001650.1 + 60328 0.67 0.770492
Target:  5'- aGGAGGG-CGGGgaGCUGCAGGCGccgGUu -3'
miRNA:   3'- aCCUUCCaGUCC--CGGUGUCCGCa--CAc -5'
3615 3' -58.5 NC_001650.1 + 50736 0.67 0.770492
Target:  5'- -aGAAGGaCAGGGCCGCgguGGGCGc--- -3'
miRNA:   3'- acCUUCCaGUCCCGGUG---UCCGCacac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.