Results 21 - 40 of 227 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3615 | 5' | -70.2 | NC_001650.1 | + | 36830 | 0.66 | 0.374429 |
Target: 5'- uGCuGCCCGUCCgUGagcaCCCGCCgCGUg -3' miRNA: 3'- gCG-CGGGCAGGgGCc---GGGCGGgGCGg -5' |
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3615 | 5' | -70.2 | NC_001650.1 | + | 110900 | 0.66 | 0.374429 |
Target: 5'- gGCcuGCCCGcugggUCCCGGUCCGgCaUCGCCc -3' miRNA: 3'- gCG--CGGGCa----GGGGCCGGGCgG-GGCGG- -5' |
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3615 | 5' | -70.2 | NC_001650.1 | + | 93766 | 0.66 | 0.370089 |
Target: 5'- gGCGUCCGUcugcgugggcgaCCCCacgcagaccacgcagGGCaCCGCgCCGCUc -3' miRNA: 3'- gCGCGGGCA------------GGGG---------------CCG-GGCGgGGCGG- -5' |
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3615 | 5' | -70.2 | NC_001650.1 | + | 111395 | 0.66 | 0.381736 |
Target: 5'- gGcCGCCUGagccgCCUgGGCCUGacugggaCCCGCCu -3' miRNA: 3'- gC-GCGGGCa----GGGgCCGGGCg------GGGCGG- -5' |
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3615 | 5' | -70.2 | NC_001650.1 | + | 54187 | 0.66 | 0.396634 |
Target: 5'- aGuCGCCgGUggagcUCCCGGgCCGCCCagGCUc -3' miRNA: 3'- gC-GCGGgCA-----GGGGCCgGGCGGGg-CGG- -5' |
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3615 | 5' | -70.2 | NC_001650.1 | + | 146685 | 0.66 | 0.396634 |
Target: 5'- uGgGCUCGcggCgCCCGGgCCGCCUaggGCCg -3' miRNA: 3'- gCgCGGGCa--G-GGGCCgGGCGGGg--CGG- -5' |
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3615 | 5' | -70.2 | NC_001650.1 | + | 91128 | 0.66 | 0.396634 |
Target: 5'- gGCGCUCGgagaCUgGGUCCuCCCgGCCg -3' miRNA: 3'- gCGCGGGCag--GGgCCGGGcGGGgCGG- -5' |
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3615 | 5' | -70.2 | NC_001650.1 | + | 134308 | 0.66 | 0.396634 |
Target: 5'- gGCcagacuaCCCGUcuucccCCCCGGCgCC-CCCCGCg -3' miRNA: 3'- gCGc------GGGCA------GGGGCCG-GGcGGGGCGg -5' |
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3615 | 5' | -70.2 | NC_001650.1 | + | 136481 | 0.66 | 0.396634 |
Target: 5'- cCGCaucaGCCCGUcagcuucgCCCCcGCCaagaagguCGCCgCCGCCa -3' miRNA: 3'- -GCG----CGGGCA--------GGGGcCGG--------GCGG-GGCGG- -5' |
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3615 | 5' | -70.2 | NC_001650.1 | + | 143659 | 0.66 | 0.389139 |
Target: 5'- gCGCgaGCCCGcgucCCCCGGCUCGguCCUCuCCa -3' miRNA: 3'- -GCG--CGGGCa---GGGGCCGGGC--GGGGcGG- -5' |
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3615 | 5' | -70.2 | NC_001650.1 | + | 133431 | 0.66 | 0.381736 |
Target: 5'- gGCgGCCCGcUCCCaGCCC-CCaCGCCg -3' miRNA: 3'- gCG-CGGGCaGGGGcCGGGcGGgGCGG- -5' |
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3615 | 5' | -70.2 | NC_001650.1 | + | 36705 | 0.66 | 0.404222 |
Target: 5'- --aGCCCcagCCUGGCCCuGCCCC-CCg -3' miRNA: 3'- gcgCGGGcagGGGCCGGG-CGGGGcGG- -5' |
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3615 | 5' | -70.2 | NC_001650.1 | + | 79001 | 0.66 | 0.374429 |
Target: 5'- aGCGCCgGUCgCggCGGCgaucUCGuCCCCGCUg -3' miRNA: 3'- gCGCGGgCAGgG--GCCG----GGC-GGGGCGG- -5' |
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3615 | 5' | -70.2 | NC_001650.1 | + | 36254 | 0.66 | 0.374429 |
Target: 5'- aCGUGCCCagGUucaggagcacgcUCCUGGgcgccuccCCCGaCCCCGCCu -3' miRNA: 3'- -GCGCGGG--CA------------GGGGCC--------GGGC-GGGGCGG- -5' |
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3615 | 5' | -70.2 | NC_001650.1 | + | 120744 | 0.66 | 0.3601 |
Target: 5'- cCGCGCCCugcagGUCgCCGGCgCCcagagGCaCCUGCUc -3' miRNA: 3'- -GCGCGGG-----CAGgGGCCG-GG-----CG-GGGCGG- -5' |
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3615 | 5' | -70.2 | NC_001650.1 | + | 142977 | 0.66 | 0.3601 |
Target: 5'- cCGcCGCCCuGgggaaacgCCCUGGagaCCGCCuCCGCa -3' miRNA: 3'- -GC-GCGGG-Ca-------GGGGCCg--GGCGG-GGCGg -5' |
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3615 | 5' | -70.2 | NC_001650.1 | + | 116965 | 0.66 | 0.374429 |
Target: 5'- aGUGCgaGUCCCCcgaccgcuGUCUGUCCUGCCa -3' miRNA: 3'- gCGCGggCAGGGGc-------CGGGCGGGGCGG- -5' |
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3615 | 5' | -70.2 | NC_001650.1 | + | 72792 | 0.66 | 0.374429 |
Target: 5'- gGCGCCaCGUCCgaGGCCUGCa--GCa -3' miRNA: 3'- gCGCGG-GCAGGggCCGGGCGgggCGg -5' |
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3615 | 5' | -70.2 | NC_001650.1 | + | 125369 | 0.66 | 0.389884 |
Target: 5'- cCGCGUCCGUCuguguCCCGGggcggaagacccucaUCGCCCUcuGCCu -3' miRNA: 3'- -GCGCGGGCAG-----GGGCCg--------------GGCGGGG--CGG- -5' |
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3615 | 5' | -70.2 | NC_001650.1 | + | 47445 | 0.66 | 0.396634 |
Target: 5'- uGcCGCCCGUgUCCaGGCUCucacCCUCGCCc -3' miRNA: 3'- gC-GCGGGCAgGGG-CCGGGc---GGGGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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