miRNA display CGI


Results 1 - 20 of 227 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3615 5' -70.2 NC_001650.1 + 27535 0.66 0.389139
Target:  5'- uGgGCCaCGgg-CUGGCCUGCCUgGCCg -3'
miRNA:   3'- gCgCGG-GCaggGGCCGGGCGGGgCGG- -5'
3615 5' -70.2 NC_001650.1 + 136481 0.66 0.396634
Target:  5'- cCGCaucaGCCCGUcagcuucgCCCCcGCCaagaagguCGCCgCCGCCa -3'
miRNA:   3'- -GCG----CGGGCA--------GGGGcCGG--------GCGG-GGCGG- -5'
3615 5' -70.2 NC_001650.1 + 142977 0.66 0.3601
Target:  5'- cCGcCGCCCuGgggaaacgCCCUGGagaCCGCCuCCGCa -3'
miRNA:   3'- -GC-GCGGG-Ca-------GGGGCCg--GGCGG-GGCGg -5'
3615 5' -70.2 NC_001650.1 + 143659 0.66 0.389139
Target:  5'- gCGCgaGCCCGcgucCCCCGGCUCGguCCUCuCCa -3'
miRNA:   3'- -GCG--CGGGCa---GGGGCCGGGC--GGGGcGG- -5'
3615 5' -70.2 NC_001650.1 + 82525 0.66 0.381736
Target:  5'- gCGCGCuUCGggcaCCCGGgCC-CCCUGCUg -3'
miRNA:   3'- -GCGCG-GGCag--GGGCCgGGcGGGGCGG- -5'
3615 5' -70.2 NC_001650.1 + 78813 0.66 0.381001
Target:  5'- gGCGCUCGgCCCUGaaccuggugcugaGCCCcCCCUGCUc -3'
miRNA:   3'- gCGCGGGCaGGGGC-------------CGGGcGGGGCGG- -5'
3615 5' -70.2 NC_001650.1 + 36705 0.66 0.404222
Target:  5'- --aGCCCcagCCUGGCCCuGCCCC-CCg -3'
miRNA:   3'- gcgCGGGcagGGGCCGGG-CGGGGcGG- -5'
3615 5' -70.2 NC_001650.1 + 97818 0.66 0.389139
Target:  5'- uCGUGaCCCucGUCCCCagaaGCaUCGCCCuCGCCc -3'
miRNA:   3'- -GCGC-GGG--CAGGGGc---CG-GGCGGG-GCGG- -5'
3615 5' -70.2 NC_001650.1 + 134308 0.66 0.396634
Target:  5'- gGCcagacuaCCCGUcuucccCCCCGGCgCC-CCCCGCg -3'
miRNA:   3'- gCGc------GGGCA------GGGGCCG-GGcGGGGCGg -5'
3615 5' -70.2 NC_001650.1 + 121383 0.66 0.381736
Target:  5'- uGCugGCCaucgCCCCGGCCggggGCgCCGCCu -3'
miRNA:   3'- gCG--CGGgca-GGGGCCGGg---CGgGGCGG- -5'
3615 5' -70.2 NC_001650.1 + 110861 0.66 0.374429
Target:  5'- uGCGCCCcuuuUCagcuaCgGGCCCcuaucGCCgCCGCCg -3'
miRNA:   3'- gCGCGGGc---AGg----GgCCGGG-----CGG-GGCGG- -5'
3615 5' -70.2 NC_001650.1 + 59746 0.66 0.381736
Target:  5'- gGgGCCCGUggcCCCCGGgggcgaggCGCCCC-CCa -3'
miRNA:   3'- gCgCGGGCA---GGGGCCgg------GCGGGGcGG- -5'
3615 5' -70.2 NC_001650.1 + 78649 0.66 0.389139
Target:  5'- uGCuGCCCGaggcgUUCCUGGaCCGCCaCgGCCu -3'
miRNA:   3'- gCG-CGGGC-----AGGGGCCgGGCGG-GgCGG- -5'
3615 5' -70.2 NC_001650.1 + 47445 0.66 0.396634
Target:  5'- uGcCGCCCGUgUCCaGGCUCucacCCUCGCCc -3'
miRNA:   3'- gC-GCGGGCAgGGG-CCGGGc---GGGGCGG- -5'
3615 5' -70.2 NC_001650.1 + 91128 0.66 0.396634
Target:  5'- gGCGCUCGgagaCUgGGUCCuCCCgGCCg -3'
miRNA:   3'- gCGCGGGCag--GGgCCGGGcGGGgCGG- -5'
3615 5' -70.2 NC_001650.1 + 156818 0.66 0.381736
Target:  5'- cCGgGCaCCGggCgUCUGGCagcaGCCCCGCCa -3'
miRNA:   3'- -GCgCG-GGCa-G-GGGCCGgg--CGGGGCGG- -5'
3615 5' -70.2 NC_001650.1 + 49750 0.66 0.374429
Target:  5'- gGgGCaCCGUgCCCGGCgCGCa--GCCg -3'
miRNA:   3'- gCgCG-GGCAgGGGCCGgGCGgggCGG- -5'
3615 5' -70.2 NC_001650.1 + 29741 0.66 0.3601
Target:  5'- uCGCGCUagCGcCCCaggCGGCCgCGCCCCaGUa -3'
miRNA:   3'- -GCGCGG--GCaGGG---GCCGG-GCGGGG-CGg -5'
3615 5' -70.2 NC_001650.1 + 52822 0.66 0.3601
Target:  5'- gGCGCggCGUUCUCGGC--GCCCUGCCc -3'
miRNA:   3'- gCGCGg-GCAGGGGCCGggCGGGGCGG- -5'
3615 5' -70.2 NC_001650.1 + 54187 0.66 0.396634
Target:  5'- aGuCGCCgGUggagcUCCCGGgCCGCCCagGCUc -3'
miRNA:   3'- gC-GCGGgCA-----GGGGCCgGGCGGGg-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.