miRNA display CGI


Results 1 - 20 of 227 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3615 5' -70.2 NC_001650.1 + 271 0.67 0.31302
Target:  5'- cCGgGCCCcucUCCUCGG-CCGCCCUuugugGCCc -3'
miRNA:   3'- -GCgCGGGc--AGGGGCCgGGCGGGG-----CGG- -5'
3615 5' -70.2 NC_001650.1 + 3647 0.71 0.191463
Target:  5'- gGCcgacccCCCGUCCCCGucacggggcGuCCCGCUCUGCCa -3'
miRNA:   3'- gCGc-----GGGCAGGGGC---------C-GGGCGGGGCGG- -5'
3615 5' -70.2 NC_001650.1 + 4411 0.7 0.209143
Target:  5'- ---cCCCGUCCCCcauuGGCCgGCCUCGaCCg -3'
miRNA:   3'- gcgcGGGCAGGGG----CCGGgCGGGGC-GG- -5'
3615 5' -70.2 NC_001650.1 + 8811 0.67 0.31302
Target:  5'- uGUGCCCGaugCCCCu-CCCGCgCgCGCCc -3'
miRNA:   3'- gCGCGGGCa--GGGGccGGGCG-GgGCGG- -5'
3615 5' -70.2 NC_001650.1 + 15390 0.67 0.346158
Target:  5'- cCGCGaCCCccagacaCCCCGcGCCgCGCCCguggcgcggCGCCa -3'
miRNA:   3'- -GCGC-GGGca-----GGGGC-CGG-GCGGG---------GCGG- -5'
3615 5' -70.2 NC_001650.1 + 21870 0.73 0.130257
Target:  5'- cCGCGCCguCGUCCCCgcuggucagguaGGaCCCcaGCCCCGCg -3'
miRNA:   3'- -GCGCGG--GCAGGGG------------CC-GGG--CGGGGCGg -5'
3615 5' -70.2 NC_001650.1 + 21989 0.73 0.133293
Target:  5'- gGCGCCC-UCCCCGGCgUcCCCCaCCa -3'
miRNA:   3'- gCGCGGGcAGGGGCCGgGcGGGGcGG- -5'
3615 5' -70.2 NC_001650.1 + 22026 0.76 0.088399
Target:  5'- gCGUGCCCGUCCCggcccUGGCCCaCCCCaaggcggacgcgcucGCCa -3'
miRNA:   3'- -GCGCGGGCAGGG-----GCCGGGcGGGG---------------CGG- -5'
3615 5' -70.2 NC_001650.1 + 22489 0.7 0.223312
Target:  5'- gGCGCCg---CCCGGCauggGCCCCGCCu -3'
miRNA:   3'- gCGCGGgcagGGGCCGgg--CGGGGCGG- -5'
3615 5' -70.2 NC_001650.1 + 22543 0.71 0.195756
Target:  5'- cCGCGCCUccaucaucUCCCCcaaGGCCUGCCUguCGCCc -3'
miRNA:   3'- -GCGCGGGc-------AGGGG---CCGGGCGGG--GCGG- -5'
3615 5' -70.2 NC_001650.1 + 23572 0.68 0.2765
Target:  5'- aGCGUCC-UCagCCUGGCCCugGCCCCcauaGCCa -3'
miRNA:   3'- gCGCGGGcAG--GGGCCGGG--CGGGG----CGG- -5'
3615 5' -70.2 NC_001650.1 + 23869 0.67 0.35308
Target:  5'- gCGCGCUCGgucaUCCUGuuucuGCCCGCCUCcCCg -3'
miRNA:   3'- -GCGCGGGCa---GGGGC-----CGGGCGGGGcGG- -5'
3615 5' -70.2 NC_001650.1 + 23973 0.69 0.264547
Target:  5'- aGCGCCCc-CCUCGGgcgggucUCCGCCCC-CCg -3'
miRNA:   3'- gCGCGGGcaGGGGCC-------GGGCGGGGcGG- -5'
3615 5' -70.2 NC_001650.1 + 24192 0.7 0.228213
Target:  5'- gCGCGCCagcuugCCCaGGUaCGCCCCGCUg -3'
miRNA:   3'- -GCGCGGgca---GGGgCCGgGCGGGGCGG- -5'
3615 5' -70.2 NC_001650.1 + 24256 0.69 0.248733
Target:  5'- gGCcCCCGUCCCCGacGUCgUGCCCCgagacgGCCa -3'
miRNA:   3'- gCGcGGGCAGGGGC--CGG-GCGGGG------CGG- -5'
3615 5' -70.2 NC_001650.1 + 25071 0.74 0.11335
Target:  5'- gCGgGCCCG-CCauGGCCUaCCCCGCCa -3'
miRNA:   3'- -GCgCGGGCaGGggCCGGGcGGGGCGG- -5'
3615 5' -70.2 NC_001650.1 + 27004 0.77 0.066944
Target:  5'- gGCGCgCGgcucCCCCGGCCCGCUCCucaaacuccgcguaGCCa -3'
miRNA:   3'- gCGCGgGCa---GGGGCCGGGCGGGG--------------CGG- -5'
3615 5' -70.2 NC_001650.1 + 27535 0.66 0.389139
Target:  5'- uGgGCCaCGgg-CUGGCCUGCCUgGCCg -3'
miRNA:   3'- gCgCGG-GCaggGGCCGGGCGGGgCGG- -5'
3615 5' -70.2 NC_001650.1 + 27601 0.7 0.2185
Target:  5'- gCGUGCCCG-CCUCGGCCCuCUCgGgCa -3'
miRNA:   3'- -GCGCGGGCaGGGGCCGGGcGGGgCgG- -5'
3615 5' -70.2 NC_001650.1 + 27789 0.66 0.374429
Target:  5'- uGCGagCUGUgCCgCGGCuCCuGCCCgGCCa -3'
miRNA:   3'- gCGCg-GGCAgGG-GCCG-GG-CGGGgCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.