miRNA display CGI


Results 1 - 20 of 227 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3615 5' -70.2 NC_001650.1 + 110654 0.71 0.175109
Target:  5'- gGgGaCCCGUCCCCGcGCaCgCGCCCCcucgggcgauGCCg -3'
miRNA:   3'- gCgC-GGGCAGGGGC-CG-G-GCGGGG----------CGG- -5'
3615 5' -70.2 NC_001650.1 + 145920 0.73 0.133293
Target:  5'- aCGgGCCCcagGUCCCCGGgcuCCCuguGCCCCaGCCc -3'
miRNA:   3'- -GCgCGGG---CAGGGGCC---GGG---CGGGG-CGG- -5'
3615 5' -70.2 NC_001650.1 + 79393 0.73 0.136393
Target:  5'- cCGCGcCCCGUcgcgcCCCCGGgCggCGCCCCGUg -3'
miRNA:   3'- -GCGC-GGGCA-----GGGGCCgG--GCGGGGCGg -5'
3615 5' -70.2 NC_001650.1 + 141239 0.73 0.136393
Target:  5'- --aGCCCGgggucCCCCGGUUCGCCCUcgGCCc -3'
miRNA:   3'- gcgCGGGCa----GGGGCCGGGCGGGG--CGG- -5'
3615 5' -70.2 NC_001650.1 + 120972 0.73 0.142467
Target:  5'- uCGCGCCCGUCUCCguggucacGGagaccucccucacCCUGCCCCugGCCa -3'
miRNA:   3'- -GCGCGGGCAGGGG--------CC-------------GGGCGGGG--CGG- -5'
3615 5' -70.2 NC_001650.1 + 111288 0.72 0.146095
Target:  5'- aGUGCCCGcCCCaacaGuGCCCGCCgCaGCCu -3'
miRNA:   3'- gCGCGGGCaGGGg---C-CGGGCGGgG-CGG- -5'
3615 5' -70.2 NC_001650.1 + 100084 0.72 0.149467
Target:  5'- gCGCGCCUcUCCCCgcaccugcggacGGCCuCGCaCgCCGCCg -3'
miRNA:   3'- -GCGCGGGcAGGGG------------CCGG-GCG-G-GGCGG- -5'
3615 5' -70.2 NC_001650.1 + 98249 0.72 0.152909
Target:  5'- -uUGCCCGUCCCCGucCCCGUCCCcauCCu -3'
miRNA:   3'- gcGCGGGCAGGGGCc-GGGCGGGGc--GG- -5'
3615 5' -70.2 NC_001650.1 + 136138 0.72 0.156068
Target:  5'- aGUGCaCGUCCCUGGCCaugcgccugaaggCGCCCC-CCg -3'
miRNA:   3'- gCGCGgGCAGGGGCCGG-------------GCGGGGcGG- -5'
3615 5' -70.2 NC_001650.1 + 56302 0.74 0.11335
Target:  5'- gGCGCgCG-CCCCaGCCCGUUCCGCa -3'
miRNA:   3'- gCGCGgGCaGGGGcCGGGCGGGGCGg -5'
3615 5' -70.2 NC_001650.1 + 25071 0.74 0.11335
Target:  5'- gCGgGCCCG-CCauGGCCUaCCCCGCCa -3'
miRNA:   3'- -GCgCGGGCaGGggCCGGGcGGGGCGG- -5'
3615 5' -70.2 NC_001650.1 + 155075 0.75 0.103242
Target:  5'- gGUGCcugCCGUCCCUGGagcaCaGCCCCGCCa -3'
miRNA:   3'- gCGCG---GGCAGGGGCCg---GgCGGGGCGG- -5'
3615 5' -70.2 NC_001650.1 + 96241 0.77 0.073646
Target:  5'- gGCGCCCccgggucgcugGUCauccuggguggcgaCCCGGUCCgGCCCCGCCg -3'
miRNA:   3'- gCGCGGG-----------CAG--------------GGGCCGGG-CGGGGCGG- -5'
3615 5' -70.2 NC_001650.1 + 61235 0.77 0.074174
Target:  5'- -cCGCCCGUCCCCGGCCaCGUggagggcgguggCCUGCUc -3'
miRNA:   3'- gcGCGGGCAGGGGCCGG-GCG------------GGGCGG- -5'
3615 5' -70.2 NC_001650.1 + 157287 0.76 0.085522
Target:  5'- uGCGCCUGgggggcaccUCCCCGccCCCGCCCuCGCCc -3'
miRNA:   3'- gCGCGGGC---------AGGGGCc-GGGCGGG-GCGG- -5'
3615 5' -70.2 NC_001650.1 + 22026 0.76 0.088399
Target:  5'- gCGUGCCCGUCCCggcccUGGCCCaCCCCaaggcggacgcgcucGCCa -3'
miRNA:   3'- -GCGCGGGCAGGG-----GCCGGGcGGGG---------------CGG- -5'
3615 5' -70.2 NC_001650.1 + 108655 0.75 0.091799
Target:  5'- uCGCGCCUGUCCCCcgaccugcacGGCCUGCUggaccuggCCGCg -3'
miRNA:   3'- -GCGCGGGCAGGGG----------CCGGGCGG--------GGCGg -5'
3615 5' -70.2 NC_001650.1 + 60092 0.75 0.091799
Target:  5'- gGUGCCCG-CCgaggguCUGGCCCGaCCCGCCg -3'
miRNA:   3'- gCGCGGGCaGG------GGCCGGGCgGGGCGG- -5'
3615 5' -70.2 NC_001650.1 + 90037 0.75 0.099909
Target:  5'- gCGCGCCCccgaugCCCguugacugccugaGGCCCGCCCCGUa -3'
miRNA:   3'- -GCGCGGGca----GGGg------------CCGGGCGGGGCGg -5'
3615 5' -70.2 NC_001650.1 + 50320 0.75 0.100851
Target:  5'- gCGCGCCuCGUCccuCCCGGCCCcggccuccucgaGCCCCGg- -3'
miRNA:   3'- -GCGCGG-GCAG---GGGCCGGG------------CGGGGCgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.