miRNA display CGI


Results 1 - 20 of 227 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3615 5' -70.2 NC_001650.1 + 35490 1.09 0.000287
Target:  5'- cCGCGCCCGUCCCCGGCCCGCCCCGCCc -3'
miRNA:   3'- -GCGCGGGCAGGGGCCGGGCGGGGCGG- -5'
3615 5' -70.2 NC_001650.1 + 127695 0.83 0.024996
Target:  5'- gGCGCCCcccUCCCCGGCCCcaucguCCCCGCCc -3'
miRNA:   3'- gCGCGGGc--AGGGGCCGGGc-----GGGGCGG- -5'
3615 5' -70.2 NC_001650.1 + 52999 0.82 0.031899
Target:  5'- uGCGCCCGggCCCCgaGGgCCGCCgCCGCCg -3'
miRNA:   3'- gCGCGGGCa-GGGG--CCgGGCGG-GGCGG- -5'
3615 5' -70.2 NC_001650.1 + 129246 0.8 0.042688
Target:  5'- cCGaCGCCCacUCCCUgguGGCCCGCUCCGCCg -3'
miRNA:   3'- -GC-GCGGGc-AGGGG---CCGGGCGGGGCGG- -5'
3615 5' -70.2 NC_001650.1 + 142931 0.8 0.043733
Target:  5'- gGCGCCUGgUCUCGGCCgCGCCgCCGCCg -3'
miRNA:   3'- gCGCGGGCaGGGGCCGG-GCGG-GGCGG- -5'
3615 5' -70.2 NC_001650.1 + 89414 0.8 0.044804
Target:  5'- cCGcCGCCCG-CCCUGGCCCGCCUcacgaucucguCGCCc -3'
miRNA:   3'- -GC-GCGGGCaGGGGCCGGGCGGG-----------GCGG- -5'
3615 5' -70.2 NC_001650.1 + 36902 0.78 0.062308
Target:  5'- gCGUGCCUGUCCaCUGGCaggauguagcccucCCGCCCgGCCa -3'
miRNA:   3'- -GCGCGGGCAGG-GGCCG--------------GGCGGGgCGG- -5'
3615 5' -70.2 NC_001650.1 + 67097 0.77 0.064278
Target:  5'- uGCucCCCGgcCCCCGGCUCGcCCCCGCCc -3'
miRNA:   3'- gCGc-GGGCa-GGGGCCGGGC-GGGGCGG- -5'
3615 5' -70.2 NC_001650.1 + 31443 0.77 0.065834
Target:  5'- -uCGCCCcacccucgUCCCGGCCCGCCCCGUUg -3'
miRNA:   3'- gcGCGGGca------GGGGCCGGGCGGGGCGG- -5'
3615 5' -70.2 NC_001650.1 + 27004 0.77 0.066944
Target:  5'- gGCGCgCGgcucCCCCGGCCCGCUCCucaaacuccgcguaGCCa -3'
miRNA:   3'- gCGCGgGCa---GGGGCCGGGCGGGG--------------CGG- -5'
3615 5' -70.2 NC_001650.1 + 85200 0.77 0.067426
Target:  5'- cCGaCGCCCGg-CUCGGCCuCGcCCCCGCCa -3'
miRNA:   3'- -GC-GCGGGCagGGGCCGG-GC-GGGGCGG- -5'
3615 5' -70.2 NC_001650.1 + 96241 0.77 0.073646
Target:  5'- gGCGCCCccgggucgcugGUCauccuggguggcgaCCCGGUCCgGCCCCGCCg -3'
miRNA:   3'- gCGCGGG-----------CAG--------------GGGCCGGG-CGGGGCGG- -5'
3615 5' -70.2 NC_001650.1 + 61235 0.77 0.074174
Target:  5'- -cCGCCCGUCCCCGGCCaCGUggagggcgguggCCUGCUc -3'
miRNA:   3'- gcGCGGGCAGGGGCCGG-GCG------------GGGCGG- -5'
3615 5' -70.2 NC_001650.1 + 51206 0.76 0.077786
Target:  5'- cCGCGCCCGcgCCCCcGUCC-CCCCGCa -3'
miRNA:   3'- -GCGCGGGCa-GGGGcCGGGcGGGGCGg -5'
3615 5' -70.2 NC_001650.1 + 124967 0.76 0.079655
Target:  5'- cCGCGCCCGUCCCCGcuuCUC-CCCCGgCu -3'
miRNA:   3'- -GCGCGGGCAGGGGCc--GGGcGGGGCgG- -5'
3615 5' -70.2 NC_001650.1 + 157287 0.76 0.085522
Target:  5'- uGCGCCUGgggggcaccUCCCCGccCCCGCCCuCGCCc -3'
miRNA:   3'- gCGCGGGC---------AGGGGCc-GGGCGGG-GCGG- -5'
3615 5' -70.2 NC_001650.1 + 125675 0.76 0.085522
Target:  5'- -uCGCCCGUCCCCGcacCCCGaaCCGCCa -3'
miRNA:   3'- gcGCGGGCAGGGGCc--GGGCggGGCGG- -5'
3615 5' -70.2 NC_001650.1 + 22026 0.76 0.088399
Target:  5'- gCGUGCCCGUCCCggcccUGGCCCaCCCCaaggcggacgcgcucGCCa -3'
miRNA:   3'- -GCGCGGGCAGGG-----GCCGGGcGGGG---------------CGG- -5'
3615 5' -70.2 NC_001650.1 + 69025 0.75 0.091152
Target:  5'- gGCGCCCcgccccucgagcgaGggCCCCGGCCUGCCCCacGCa -3'
miRNA:   3'- gCGCGGG--------------Ca-GGGGCCGGGCGGGG--CGg -5'
3615 5' -70.2 NC_001650.1 + 60092 0.75 0.091799
Target:  5'- gGUGCCCG-CCgaggguCUGGCCCGaCCCGCCg -3'
miRNA:   3'- gCGCGGGCaGG------GGCCGGGCgGGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.