Results 1 - 20 of 42 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
365 | 3' | -59.7 | AC_000011.1 | + | 18553 | 1.11 | 0.00015 |
Target: 5'- uCGCGGUCCACGGGCACGAAGCGCAGCg -3' miRNA: 3'- -GCGCCAGGUGCCCGUGCUUCGCGUCG- -5' |
|||||||
365 | 3' | -59.7 | AC_000011.1 | + | 21464 | 0.79 | 0.044535 |
Target: 5'- aGCGGUCCucgguggccaGGGCGCuGcGGCGCAGCa -3' miRNA: 3'- gCGCCAGGug--------CCCGUG-CuUCGCGUCG- -5' |
|||||||
365 | 3' | -59.7 | AC_000011.1 | + | 11122 | 0.74 | 0.114289 |
Target: 5'- gCGCGGcccgguUCCACGcGGgGCGGgagcugcGGCGCGGCc -3' miRNA: 3'- -GCGCC------AGGUGC-CCgUGCU-------UCGCGUCG- -5' |
|||||||
365 | 3' | -59.7 | AC_000011.1 | + | 20682 | 0.74 | 0.117862 |
Target: 5'- gGCGGcUCAUGGGCugGAAGuUGCGGa -3' miRNA: 3'- gCGCCaGGUGCCCGugCUUC-GCGUCg -5' |
|||||||
365 | 3' | -59.7 | AC_000011.1 | + | 24019 | 0.73 | 0.1212 |
Target: 5'- gGC-GUCggCGCGGGUGCGGuuGGCGCGGCa -3' miRNA: 3'- gCGcCAG--GUGCCCGUGCU--UCGCGUCG- -5' |
|||||||
365 | 3' | -59.7 | AC_000011.1 | + | 15660 | 0.73 | 0.135447 |
Target: 5'- aCGCGGcCCuugaGGGCGCcccagGGAGCGCGGa -3' miRNA: 3'- -GCGCCaGGug--CCCGUG-----CUUCGCGUCg -5' |
|||||||
365 | 3' | -59.7 | AC_000011.1 | + | 17505 | 0.73 | 0.135447 |
Target: 5'- aCGCGGccgUUCAUGGGCACcuGGAGCGacauCGGCa -3' miRNA: 3'- -GCGCC---AGGUGCCCGUG--CUUCGC----GUCG- -5' |
|||||||
365 | 3' | -59.7 | AC_000011.1 | + | 17856 | 0.72 | 0.151221 |
Target: 5'- uGCGGcaucUCCACGGaGC-CGgcGgGCGGCa -3' miRNA: 3'- gCGCC----AGGUGCC-CGuGCuuCgCGUCG- -5' |
|||||||
365 | 3' | -59.7 | AC_000011.1 | + | 20643 | 0.72 | 0.151221 |
Target: 5'- uGCGGUCCuuguagcccuCGGGCACGuagAAGCccugGUAGCc -3' miRNA: 3'- gCGCCAGGu---------GCCCGUGC---UUCG----CGUCG- -5' |
|||||||
365 | 3' | -59.7 | AC_000011.1 | + | 13427 | 0.72 | 0.151221 |
Target: 5'- gGCGG-CCuCGGGCAcCGccGCgGCAGCa -3' miRNA: 3'- gCGCCaGGuGCCCGU-GCuuCG-CGUCG- -5' |
|||||||
365 | 3' | -59.7 | AC_000011.1 | + | 18016 | 0.72 | 0.155418 |
Target: 5'- gGUGG-CCAgGGGCGCGAugggccGCGUGGUg -3' miRNA: 3'- gCGCCaGGUgCCCGUGCUu-----CGCGUCG- -5' |
|||||||
365 | 3' | -59.7 | AC_000011.1 | + | 11286 | 0.71 | 0.178017 |
Target: 5'- cCGCGG-CCACGuGCGCGc-GCGCGGg -3' miRNA: 3'- -GCGCCaGGUGCcCGUGCuuCGCGUCg -5' |
|||||||
365 | 3' | -59.7 | AC_000011.1 | + | 25333 | 0.71 | 0.182874 |
Target: 5'- gGUaGUCCuCGGGCACGAAcuuGCGCAaGUa -3' miRNA: 3'- gCGcCAGGuGCCCGUGCUU---CGCGU-CG- -5' |
|||||||
365 | 3' | -59.7 | AC_000011.1 | + | 16076 | 0.71 | 0.182874 |
Target: 5'- gGCGGgugCgCACGGGCACGcgcacaccGGUgGCGGCg -3' miRNA: 3'- gCGCCa--G-GUGCCCGUGCu-------UCG-CGUCG- -5' |
|||||||
365 | 3' | -59.7 | AC_000011.1 | + | 10182 | 0.7 | 0.219669 |
Target: 5'- gGCGGgggCGcCGGGCGCGAgguccucgagcauGGUGCGGUg -3' miRNA: 3'- gCGCCag-GU-GCCCGUGCU-------------UCGCGUCG- -5' |
|||||||
365 | 3' | -59.7 | AC_000011.1 | + | 9617 | 0.7 | 0.220246 |
Target: 5'- gGCGGgUCAUGuuGGUugGGAGCGgGGCg -3' miRNA: 3'- gCGCCaGGUGC--CCGugCUUCGCgUCG- -5' |
|||||||
365 | 3' | -59.7 | AC_000011.1 | + | 8511 | 0.69 | 0.238166 |
Target: 5'- gGCGG--CAgGGGCACGucGGCGCcGCg -3' miRNA: 3'- gCGCCagGUgCCCGUGCu-UCGCGuCG- -5' |
|||||||
365 | 3' | -59.7 | AC_000011.1 | + | 10278 | 0.69 | 0.244406 |
Target: 5'- gCGCGGgaacUCGCGGaCGCGGuuccagauguuGCGCAGCg -3' miRNA: 3'- -GCGCCa---GGUGCCcGUGCUu----------CGCGUCG- -5' |
|||||||
365 | 3' | -59.7 | AC_000011.1 | + | 22024 | 0.68 | 0.270727 |
Target: 5'- gCGCGGgagUUGCGGuaCACGggGuUGCAGCa -3' miRNA: 3'- -GCGCCa--GGUGCCc-GUGCuuC-GCGUCG- -5' |
|||||||
365 | 3' | -59.7 | AC_000011.1 | + | 9312 | 0.68 | 0.270727 |
Target: 5'- gGCGG-CgCACGGGCAgacggucgaUGAAGCGCu-- -3' miRNA: 3'- gCGCCaG-GUGCCCGU---------GCUUCGCGucg -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home