miRNA display CGI


Results 1 - 20 of 42 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
365 3' -59.7 AC_000011.1 + 3703 0.66 0.389522
Target:  5'- gCGCGGaauggCCAUGGGCGCc-GGCuacuaCGGCa -3'
miRNA:   3'- -GCGCCa----GGUGCCCGUGcuUCGc----GUCG- -5'
365 3' -59.7 AC_000011.1 + 6266 0.67 0.354731
Target:  5'- gGUGGUCagcucguCGGGCACGAuucugaccuGC-CAGCc -3'
miRNA:   3'- gCGCCAGgu-----GCCCGUGCUu--------CGcGUCG- -5'
365 3' -59.7 AC_000011.1 + 8413 0.67 0.314411
Target:  5'- gGCGG--CugGGGCGacgGggGCGguGCc -3'
miRNA:   3'- gCGCCagGugCCCGUg--CuuCGCguCG- -5'
365 3' -59.7 AC_000011.1 + 8511 0.69 0.238166
Target:  5'- gGCGG--CAgGGGCACGucGGCGCcGCg -3'
miRNA:   3'- gCGCCagGUgCCCGUGCu-UCGCGuCG- -5'
365 3' -59.7 AC_000011.1 + 8796 0.67 0.32219
Target:  5'- gCGCGcUCCACGGuggcCGCGAGGUcguuggagauGCGGCc -3'
miRNA:   3'- -GCGCcAGGUGCCc---GUGCUUCG----------CGUCG- -5'
365 3' -59.7 AC_000011.1 + 9312 0.68 0.270727
Target:  5'- gGCGG-CgCACGGGCAgacggucgaUGAAGCGCu-- -3'
miRNA:   3'- gCGCCaG-GUGCCCGU---------GCUUCGCGucg -5'
365 3' -59.7 AC_000011.1 + 9446 0.68 0.301514
Target:  5'- uGCGGcCCcgcgaggACGGGCGCGccgucaccGagaccaugcgacgccGGCGCGGCg -3'
miRNA:   3'- gCGCCaGG-------UGCCCGUGC--------U---------------UCGCGUCG- -5'
365 3' -59.7 AC_000011.1 + 9617 0.7 0.220246
Target:  5'- gGCGGgUCAUGuuGGUugGGAGCGgGGCg -3'
miRNA:   3'- gCGCCaGGUGC--CCGugCUUCGCgUCG- -5'
365 3' -59.7 AC_000011.1 + 9811 0.68 0.285436
Target:  5'- cCGC--UCCACGGGCACcuccuccucgcccGCGCGGCc -3'
miRNA:   3'- -GCGccAGGUGCCCGUGcuu----------CGCGUCG- -5'
365 3' -59.7 AC_000011.1 + 10182 0.7 0.219669
Target:  5'- gGCGGgggCGcCGGGCGCGAgguccucgagcauGGUGCGGUg -3'
miRNA:   3'- gCGCCag-GU-GCCCGUGCU-------------UCGCGUCG- -5'
365 3' -59.7 AC_000011.1 + 10278 0.69 0.244406
Target:  5'- gCGCGGgaacUCGCGGaCGCGGuuccagauguuGCGCAGCg -3'
miRNA:   3'- -GCGCCa---GGUGCCcGUGCUu----------CGCGUCG- -5'
365 3' -59.7 AC_000011.1 + 10970 0.67 0.338176
Target:  5'- gGCGG-CCGCGgcggucguGGCugGAAGuUGCuGCu -3'
miRNA:   3'- gCGCCaGGUGC--------CCGugCUUC-GCGuCG- -5'
365 3' -59.7 AC_000011.1 + 11122 0.74 0.114289
Target:  5'- gCGCGGcccgguUCCACGcGGgGCGGgagcugcGGCGCGGCc -3'
miRNA:   3'- -GCGCC------AGGUGC-CCgUGCU-------UCGCGUCG- -5'
365 3' -59.7 AC_000011.1 + 11286 0.71 0.178017
Target:  5'- cCGCGG-CCACGuGCGCGc-GCGCGGg -3'
miRNA:   3'- -GCGCCaGGUGCcCGUGCuuCGCGUCg -5'
365 3' -59.7 AC_000011.1 + 11547 0.67 0.354731
Target:  5'- aGCGGcCCuCGGGCuCGguGauauucaGCAGCg -3'
miRNA:   3'- gCGCCaGGuGCCCGuGCuuCg------CGUCG- -5'
365 3' -59.7 AC_000011.1 + 12400 0.66 0.398563
Target:  5'- uGCGGUCCAgguUGGucuGCACGuuGGUGCuGUu -3'
miRNA:   3'- gCGCCAGGU---GCC---CGUGCu-UCGCGuCG- -5'
365 3' -59.7 AC_000011.1 + 13095 0.68 0.29193
Target:  5'- gCGCGGUCaugucgaGCGcGGCGCuGGGgGUGGCc -3'
miRNA:   3'- -GCGCCAGg------UGC-CCGUGcUUCgCGUCG- -5'
365 3' -59.7 AC_000011.1 + 13427 0.72 0.151221
Target:  5'- gGCGG-CCuCGGGCAcCGccGCgGCAGCa -3'
miRNA:   3'- gCGCCaGGuGCCCGU-GCuuCG-CGUCG- -5'
365 3' -59.7 AC_000011.1 + 15574 0.68 0.276257
Target:  5'- uGCGcGUgCGCGGGCACuuccgcgcucccuGggGCGCccucaagGGCc -3'
miRNA:   3'- gCGC-CAgGUGCCCGUG-------------CuuCGCG-------UCG- -5'
365 3' -59.7 AC_000011.1 + 15660 0.73 0.135447
Target:  5'- aCGCGGcCCuugaGGGCGCcccagGGAGCGCGGa -3'
miRNA:   3'- -GCGCCaGGug--CCCGUG-----CUUCGCGUCg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.