Results 21 - 40 of 42 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
365 | 3' | -59.7 | AC_000011.1 | + | 15757 | 0.67 | 0.330112 |
Target: 5'- gGC-GUCCACGGuGgagACG-GGCGCGGCg -3' miRNA: 3'- gCGcCAGGUGCC-Cg--UGCuUCGCGUCG- -5' |
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365 | 3' | -59.7 | AC_000011.1 | + | 16076 | 0.71 | 0.182874 |
Target: 5'- gGCGGgugCgCACGGGCACGcgcacaccGGUgGCGGCg -3' miRNA: 3'- gCGCCa--G-GUGCCCGUGCu-------UCG-CGUCG- -5' |
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365 | 3' | -59.7 | AC_000011.1 | + | 16422 | 0.67 | 0.338176 |
Target: 5'- gGCGG-CCGagcgccUGGGCgaguuugcuuACGGcaAGCGCAGCc -3' miRNA: 3'- gCGCCaGGU------GCCCG----------UGCU--UCGCGUCG- -5' |
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365 | 3' | -59.7 | AC_000011.1 | + | 17116 | 0.66 | 0.362366 |
Target: 5'- gCGCGG-CCGCGGcgguacacucuccGCACc-AGgGCGGCa -3' miRNA: 3'- -GCGCCaGGUGCC-------------CGUGcuUCgCGUCG- -5' |
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365 | 3' | -59.7 | AC_000011.1 | + | 17505 | 0.73 | 0.135447 |
Target: 5'- aCGCGGccgUUCAUGGGCACcuGGAGCGacauCGGCa -3' miRNA: 3'- -GCGCC---AGGUGCCCGUG--CUUCGC----GUCG- -5' |
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365 | 3' | -59.7 | AC_000011.1 | + | 17699 | 0.68 | 0.309812 |
Target: 5'- gGUGGUCgAUGGGCucgccucgggcaucaACGggGUGguGg -3' miRNA: 3'- gCGCCAGgUGCCCG---------------UGCuuCGCguCg -5' |
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365 | 3' | -59.7 | AC_000011.1 | + | 17856 | 0.72 | 0.151221 |
Target: 5'- uGCGGcaucUCCACGGaGC-CGgcGgGCGGCa -3' miRNA: 3'- gCGCC----AGGUGCC-CGuGCuuCgCGUCG- -5' |
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365 | 3' | -59.7 | AC_000011.1 | + | 18016 | 0.72 | 0.155418 |
Target: 5'- gGUGG-CCAgGGGCGCGAugggccGCGUGGUg -3' miRNA: 3'- gCGCCaGGUgCCCGUGCUu-----CGCGUCG- -5' |
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365 | 3' | -59.7 | AC_000011.1 | + | 18553 | 1.11 | 0.00015 |
Target: 5'- uCGCGGUCCACGGGCACGAAGCGCAGCg -3' miRNA: 3'- -GCGCCAGGUGCCCGUGCUUCGCGUCG- -5' |
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365 | 3' | -59.7 | AC_000011.1 | + | 19868 | 0.68 | 0.299281 |
Target: 5'- aCGuuGUCCAUGGGauccaGCGAccAGCGC-GCc -3' miRNA: 3'- -GCgcCAGGUGCCCg----UGCU--UCGCGuCG- -5' |
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365 | 3' | -59.7 | AC_000011.1 | + | 20643 | 0.72 | 0.151221 |
Target: 5'- uGCGGUCCuuguagcccuCGGGCACGuagAAGCccugGUAGCc -3' miRNA: 3'- gCGCCAGGu---------GCCCGUGC---UUCG----CGUCG- -5' |
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365 | 3' | -59.7 | AC_000011.1 | + | 20682 | 0.74 | 0.117862 |
Target: 5'- gGCGGcUCAUGGGCugGAAGuUGCGGa -3' miRNA: 3'- gCGCCaGGUGCCCGugCUUC-GCGUCg -5' |
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365 | 3' | -59.7 | AC_000011.1 | + | 21464 | 0.79 | 0.044535 |
Target: 5'- aGCGGUCCucgguggccaGGGCGCuGcGGCGCAGCa -3' miRNA: 3'- gCGCCAGGug--------CCCGUG-CuUCGCGUCG- -5' |
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365 | 3' | -59.7 | AC_000011.1 | + | 21571 | 0.67 | 0.338176 |
Target: 5'- gGCGGUCgGgccaGuGCACGAAGCgugcaggaacauGCAGCa -3' miRNA: 3'- gCGCCAGgUg---CcCGUGCUUCG------------CGUCG- -5' |
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365 | 3' | -59.7 | AC_000011.1 | + | 22024 | 0.68 | 0.270727 |
Target: 5'- gCGCGGgagUUGCGGuaCACGggGuUGCAGCa -3' miRNA: 3'- -GCGCCa--GGUGCCc-GUGCuuC-GCGUCG- -5' |
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365 | 3' | -59.7 | AC_000011.1 | + | 23829 | 0.66 | 0.398563 |
Target: 5'- gCGCGGcugagcuccUCCACgcugagGGGCACcucGGUGCGGUc -3' miRNA: 3'- -GCGCC---------AGGUG------CCCGUGcu-UCGCGUCG- -5' |
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365 | 3' | -59.7 | AC_000011.1 | + | 24019 | 0.73 | 0.1212 |
Target: 5'- gGC-GUCggCGCGGGUGCGGuuGGCGCGGCa -3' miRNA: 3'- gCGcCAG--GUGCCCGUGCU--UCGCGUCG- -5' |
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365 | 3' | -59.7 | AC_000011.1 | + | 25025 | 0.67 | 0.314411 |
Target: 5'- uCGCGGaaggUCAgcGGCACGAAGUccgaggGCAGCg -3' miRNA: 3'- -GCGCCa---GGUgcCCGUGCUUCG------CGUCG- -5' |
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365 | 3' | -59.7 | AC_000011.1 | + | 25333 | 0.71 | 0.182874 |
Target: 5'- gGUaGUCCuCGGGCACGAAcuuGCGCAaGUa -3' miRNA: 3'- gCGcCAGGuGCCCGUGCUU---CGCGU-CG- -5' |
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365 | 3' | -59.7 | AC_000011.1 | + | 26383 | 0.66 | 0.377094 |
Target: 5'- gGCGGg-CGCGGGCuacucuuuaagagUGAGcGCGCAGUa -3' miRNA: 3'- gCGCCagGUGCCCGu------------GCUU-CGCGUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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