miRNA display CGI


Results 21 - 40 of 42 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
365 3' -59.7 AC_000011.1 + 15574 0.68 0.276257
Target:  5'- uGCGcGUgCGCGGGCACuuccgcgcucccuGggGCGCccucaagGGCc -3'
miRNA:   3'- gCGC-CAgGUGCCCGUG-------------CuuCGCG-------UCG- -5'
365 3' -59.7 AC_000011.1 + 22024 0.68 0.270727
Target:  5'- gCGCGGgagUUGCGGuaCACGggGuUGCAGCa -3'
miRNA:   3'- -GCGCCa--GGUGCCc-GUGCuuC-GCGUCG- -5'
365 3' -59.7 AC_000011.1 + 9312 0.68 0.270727
Target:  5'- gGCGG-CgCACGGGCAgacggucgaUGAAGCGCu-- -3'
miRNA:   3'- gCGCCaG-GUGCCCGU---------GCUUCGCGucg -5'
365 3' -59.7 AC_000011.1 + 34342 0.68 0.270727
Target:  5'- aGauGaUCCACGGGUACG-AGCGguGg -3'
miRNA:   3'- gCgcC-AGGUGCCCGUGCuUCGCguCg -5'
365 3' -59.7 AC_000011.1 + 10278 0.69 0.244406
Target:  5'- gCGCGGgaacUCGCGGaCGCGGuuccagauguuGCGCAGCg -3'
miRNA:   3'- -GCGCCa---GGUGCCcGUGCUu----------CGCGUCG- -5'
365 3' -59.7 AC_000011.1 + 8511 0.69 0.238166
Target:  5'- gGCGG--CAgGGGCACGucGGCGCcGCg -3'
miRNA:   3'- gCGCCagGUgCCCGUGCu-UCGCGuCG- -5'
365 3' -59.7 AC_000011.1 + 9617 0.7 0.220246
Target:  5'- gGCGGgUCAUGuuGGUugGGAGCGgGGCg -3'
miRNA:   3'- gCGCCaGGUGC--CCGugCUUCGCgUCG- -5'
365 3' -59.7 AC_000011.1 + 10182 0.7 0.219669
Target:  5'- gGCGGgggCGcCGGGCGCGAgguccucgagcauGGUGCGGUg -3'
miRNA:   3'- gCGCCag-GU-GCCCGUGCU-------------UCGCGUCG- -5'
365 3' -59.7 AC_000011.1 + 25333 0.71 0.182874
Target:  5'- gGUaGUCCuCGGGCACGAAcuuGCGCAaGUa -3'
miRNA:   3'- gCGcCAGGuGCCCGUGCUU---CGCGU-CG- -5'
365 3' -59.7 AC_000011.1 + 16076 0.71 0.182874
Target:  5'- gGCGGgugCgCACGGGCACGcgcacaccGGUgGCGGCg -3'
miRNA:   3'- gCGCCa--G-GUGCCCGUGCu-------UCG-CGUCG- -5'
365 3' -59.7 AC_000011.1 + 11286 0.71 0.178017
Target:  5'- cCGCGG-CCACGuGCGCGc-GCGCGGg -3'
miRNA:   3'- -GCGCCaGGUGCcCGUGCuuCGCGUCg -5'
365 3' -59.7 AC_000011.1 + 18016 0.72 0.155418
Target:  5'- gGUGG-CCAgGGGCGCGAugggccGCGUGGUg -3'
miRNA:   3'- gCGCCaGGUgCCCGUGCUu-----CGCGUCG- -5'
365 3' -59.7 AC_000011.1 + 20643 0.72 0.151221
Target:  5'- uGCGGUCCuuguagcccuCGGGCACGuagAAGCccugGUAGCc -3'
miRNA:   3'- gCGCCAGGu---------GCCCGUGC---UUCG----CGUCG- -5'
365 3' -59.7 AC_000011.1 + 17856 0.72 0.151221
Target:  5'- uGCGGcaucUCCACGGaGC-CGgcGgGCGGCa -3'
miRNA:   3'- gCGCC----AGGUGCC-CGuGCuuCgCGUCG- -5'
365 3' -59.7 AC_000011.1 + 13427 0.72 0.151221
Target:  5'- gGCGG-CCuCGGGCAcCGccGCgGCAGCa -3'
miRNA:   3'- gCGCCaGGuGCCCGU-GCuuCG-CGUCG- -5'
365 3' -59.7 AC_000011.1 + 17505 0.73 0.135447
Target:  5'- aCGCGGccgUUCAUGGGCACcuGGAGCGacauCGGCa -3'
miRNA:   3'- -GCGCC---AGGUGCCCGUG--CUUCGC----GUCG- -5'
365 3' -59.7 AC_000011.1 + 15660 0.73 0.135447
Target:  5'- aCGCGGcCCuugaGGGCGCcccagGGAGCGCGGa -3'
miRNA:   3'- -GCGCCaGGug--CCCGUG-----CUUCGCGUCg -5'
365 3' -59.7 AC_000011.1 + 24019 0.73 0.1212
Target:  5'- gGC-GUCggCGCGGGUGCGGuuGGCGCGGCa -3'
miRNA:   3'- gCGcCAG--GUGCCCGUGCU--UCGCGUCG- -5'
365 3' -59.7 AC_000011.1 + 20682 0.74 0.117862
Target:  5'- gGCGGcUCAUGGGCugGAAGuUGCGGa -3'
miRNA:   3'- gCGCCaGGUGCCCGugCUUC-GCGUCg -5'
365 3' -59.7 AC_000011.1 + 11122 0.74 0.114289
Target:  5'- gCGCGGcccgguUCCACGcGGgGCGGgagcugcGGCGCGGCc -3'
miRNA:   3'- -GCGCC------AGGUGC-CCgUGCU-------UCGCGUCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.