miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3657 3' -56.9 NC_001650.1 + 50664 0.66 0.913779
Target:  5'- --cCGCgGGGGGCCUGaccuUcuaccugcugcccguGACCCUGGu -3'
miRNA:   3'- caaGCGgCCCUCGGAC----A---------------UUGGGACUc -5'
3657 3' -56.9 NC_001650.1 + 56791 0.66 0.911443
Target:  5'- cUUCGCCuGGAGCUcg-GGCgCUGAGu -3'
miRNA:   3'- cAAGCGGcCCUCGGacaUUGgGACUC- -5'
3657 3' -56.9 NC_001650.1 + 69656 0.66 0.911443
Target:  5'- --gUGCCGGGcccgGGCCgUGUucugccacuCCCUGAGc -3'
miRNA:   3'- caaGCGGCCC----UCGG-ACAuu-------GGGACUC- -5'
3657 3' -56.9 NC_001650.1 + 127644 0.66 0.905442
Target:  5'- -cUCGCacaGGGAgaGCCUGc--CCCUGAu -3'
miRNA:   3'- caAGCGg--CCCU--CGGACauuGGGACUc -5'
3657 3' -56.9 NC_001650.1 + 158756 0.66 0.899213
Target:  5'- ---gGCCGGGuGCU---GACCCUGAu -3'
miRNA:   3'- caagCGGCCCuCGGacaUUGGGACUc -5'
3657 3' -56.9 NC_001650.1 + 158265 0.66 0.899213
Target:  5'- ---gGCCGuGGAgGCCUGgauGCCCaGGGg -3'
miRNA:   3'- caagCGGC-CCU-CGGACau-UGGGaCUC- -5'
3657 3' -56.9 NC_001650.1 + 51026 0.67 0.872082
Target:  5'- --gCGCCGGG-GCCgcgGU-GCCC-GAGa -3'
miRNA:   3'- caaGCGGCCCuCGGa--CAuUGGGaCUC- -5'
3657 3' -56.9 NC_001650.1 + 156398 0.67 0.864766
Target:  5'- -cUgGCCGGGcAGUgCgggGUGACCCUGGa -3'
miRNA:   3'- caAgCGGCCC-UCG-Ga--CAUUGGGACUc -5'
3657 3' -56.9 NC_001650.1 + 80689 0.67 0.849529
Target:  5'- -gUgGCCGGGGGCUacacgGACCCgggGAGc -3'
miRNA:   3'- caAgCGGCCCUCGGaca--UUGGGa--CUC- -5'
3657 3' -56.9 NC_001650.1 + 28817 0.68 0.833525
Target:  5'- --gUGCCcaGGGAGUCUGUGACCgagCUGGc -3'
miRNA:   3'- caaGCGG--CCCUCGGACAUUGG---GACUc -5'
3657 3' -56.9 NC_001650.1 + 26727 0.68 0.833525
Target:  5'- cUUCGCCGGGcccGGCCUGgaggGGCUgUGc- -3'
miRNA:   3'- cAAGCGGCCC---UCGGACa---UUGGgACuc -5'
3657 3' -56.9 NC_001650.1 + 143707 0.68 0.816811
Target:  5'- -gUCGCgaaGAGCCUG--GCCCUGAGg -3'
miRNA:   3'- caAGCGgccCUCGGACauUGGGACUC- -5'
3657 3' -56.9 NC_001650.1 + 148881 0.69 0.763017
Target:  5'- -aUCGCUauGGGGGCg-GUAACCgUGAGu -3'
miRNA:   3'- caAGCGG--CCCUCGgaCAUUGGgACUC- -5'
3657 3' -56.9 NC_001650.1 + 59736 0.69 0.744091
Target:  5'- gGggCGUCGaGGGGCCcGUGGCCCccgGGGg -3'
miRNA:   3'- -CaaGCGGC-CCUCGGaCAUUGGGa--CUC- -5'
3657 3' -56.9 NC_001650.1 + 23231 0.69 0.734481
Target:  5'- --aCGcCCGGGAGguCCUGcugggGAUCCUGAGg -3'
miRNA:   3'- caaGC-GGCCCUC--GGACa----UUGGGACUC- -5'
3657 3' -56.9 NC_001650.1 + 131354 0.7 0.705169
Target:  5'- ---gGCCGGGGGcCCUGUacggGACUCUGGc -3'
miRNA:   3'- caagCGGCCCUC-GGACA----UUGGGACUc -5'
3657 3' -56.9 NC_001650.1 + 111022 0.7 0.705169
Target:  5'- ---gGCUGGGcAGCCUG--GCUCUGAGg -3'
miRNA:   3'- caagCGGCCC-UCGGACauUGGGACUC- -5'
3657 3' -56.9 NC_001650.1 + 147675 0.7 0.695266
Target:  5'- ---gGCCGGGAGCC----GCUCUGGGg -3'
miRNA:   3'- caagCGGCCCUCGGacauUGGGACUC- -5'
3657 3' -56.9 NC_001650.1 + 52595 0.7 0.694273
Target:  5'- cUUCGcCCGGGAGCuCUGggaugggggccacUGGCCCgGGGg -3'
miRNA:   3'- cAAGC-GGCCCUCG-GAC-------------AUUGGGaCUC- -5'
3657 3' -56.9 NC_001650.1 + 134524 0.7 0.694273
Target:  5'- gGggCGCCGGGggggaagacggguAGUCUG--GCCCUGGGg -3'
miRNA:   3'- -CaaGCGGCCC-------------UCGGACauUGGGACUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.