miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3663 5' -50.9 NC_001650.1 + 59106 1.12 0.00799
Target:  5'- uCGUGGACGUGUUUAGCUACCCCAAGGa -3'
miRNA:   3'- -GCACCUGCACAAAUCGAUGGGGUUCC- -5'
3663 5' -50.9 NC_001650.1 + 85331 0.75 0.808956
Target:  5'- uGUGcGACGUG---GGCUuccuccagaGCCCCAAGGa -3'
miRNA:   3'- gCAC-CUGCACaaaUCGA---------UGGGGUUCC- -5'
3663 5' -50.9 NC_001650.1 + 97996 0.74 0.843216
Target:  5'- cCGUGGGCG-GUUacg--ACCCCAAGGg -3'
miRNA:   3'- -GCACCUGCaCAAaucgaUGGGGUUCC- -5'
3663 5' -50.9 NC_001650.1 + 21620 0.74 0.859196
Target:  5'- gGUGGGCGccGUcucugAGCUGCCCgCGGGGc -3'
miRNA:   3'- gCACCUGCa-CAaa---UCGAUGGG-GUUCC- -5'
3663 5' -50.9 NC_001650.1 + 134556 0.73 0.874334
Target:  5'- uCGaUGGGCGUGUgggacacGGaggGCCCCGGGGg -3'
miRNA:   3'- -GC-ACCUGCACAaa-----UCga-UGGGGUUCC- -5'
3663 5' -50.9 NC_001650.1 + 77256 0.72 0.920081
Target:  5'- gCGUGGACacg---GGCUcCCCCGAGGc -3'
miRNA:   3'- -GCACCUGcacaaaUCGAuGGGGUUCC- -5'
3663 5' -50.9 NC_001650.1 + 26468 0.72 0.920081
Target:  5'- gCGUGGGCccGUgcGGCUucguguaccuguACCCCGGGGa -3'
miRNA:   3'- -GCACCUGcaCAaaUCGA------------UGGGGUUCC- -5'
3663 5' -50.9 NC_001650.1 + 61299 0.71 0.94984
Target:  5'- cCGUGGGCGUG---GGCUAUCUgGAGc -3'
miRNA:   3'- -GCACCUGCACaaaUCGAUGGGgUUCc -5'
3663 5' -50.9 NC_001650.1 + 21406 0.7 0.957835
Target:  5'- aCGUGcccACGUGgc-AGCacgGCCCCGGGGg -3'
miRNA:   3'- -GCACc--UGCACaaaUCGa--UGGGGUUCC- -5'
3663 5' -50.9 NC_001650.1 + 182905 0.7 0.961485
Target:  5'- uGUGGGCGgGUaggcaugUAGCcaggUugCCCAAGGa -3'
miRNA:   3'- gCACCUGCaCAa------AUCG----AugGGGUUCC- -5'
3663 5' -50.9 NC_001650.1 + 16198 0.7 0.961485
Target:  5'- uGUGGGCGgGUaggcaugUAGCcaggUugCCCAAGGa -3'
miRNA:   3'- gCACCUGCaCAa------AUCG----AugGGGUUCC- -5'
3663 5' -50.9 NC_001650.1 + 66658 0.7 0.96491
Target:  5'- -cUGGGCGUGau--GCUGCcguCCCGGGGg -3'
miRNA:   3'- gcACCUGCACaaauCGAUG---GGGUUCC- -5'
3663 5' -50.9 NC_001650.1 + 85806 0.69 0.976478
Target:  5'- aGUGGGC------AGCUugCCCGGGGg -3'
miRNA:   3'- gCACCUGcacaaaUCGAugGGGUUCC- -5'
3663 5' -50.9 NC_001650.1 + 57976 0.69 0.981077
Target:  5'- cCG-GGGCGUcgaugGGCUguccgaaccucuGCCCCAGGGa -3'
miRNA:   3'- -GCaCCUGCAcaaa-UCGA------------UGGGGUUCC- -5'
3663 5' -50.9 NC_001650.1 + 79464 0.68 0.983107
Target:  5'- gCG-GGGCGUGgacccucUGGCUGCCCUGauuuuAGGu -3'
miRNA:   3'- -GCaCCUGCACaa-----AUCGAUGGGGU-----UCC- -5'
3663 5' -50.9 NC_001650.1 + 49123 0.68 0.984968
Target:  5'- aCGUGGugGUGgagaccgUGGUcuccgACCUCAAGa -3'
miRNA:   3'- -GCACCugCACaa-----AUCGa----UGGGGUUCc -5'
3663 5' -50.9 NC_001650.1 + 122471 0.68 0.986668
Target:  5'- aCGUGGACGUGcccguGCccguCUUCAAGGa -3'
miRNA:   3'- -GCACCUGCACaaau-CGau--GGGGUUCC- -5'
3663 5' -50.9 NC_001650.1 + 170903 0.67 0.990893
Target:  5'- cCGUGGGCG-----AGCUccGCCCCGGGc -3'
miRNA:   3'- -GCACCUGCacaaaUCGA--UGGGGUUCc -5'
3663 5' -50.9 NC_001650.1 + 131557 0.67 0.990893
Target:  5'- -cUGGACGcGg--GGCggagaaACCCCGAGGc -3'
miRNA:   3'- gcACCUGCaCaaaUCGa-----UGGGGUUCC- -5'
3663 5' -50.9 NC_001650.1 + 117664 0.67 0.990893
Target:  5'- --cGGGCGUGg--GGCacACCCCGcccAGGa -3'
miRNA:   3'- gcaCCUGCACaaaUCGa-UGGGGU---UCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.