miRNA display CGI


Results 1 - 20 of 47 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3663 5' -50.9 NC_001650.1 + 4196 0.67 0.990893
Target:  5'- cCGUGGGCG-----AGCUccGCCCCGGGc -3'
miRNA:   3'- -GCACCUGCacaaaUCGA--UGGGGUUCc -5'
3663 5' -50.9 NC_001650.1 + 5638 0.66 0.996734
Target:  5'- aGUGGGCGgcccccUUAGac-CCCCGGGGc -3'
miRNA:   3'- gCACCUGCaca---AAUCgauGGGGUUCC- -5'
3663 5' -50.9 NC_001650.1 + 16198 0.7 0.961485
Target:  5'- uGUGGGCGgGUaggcaugUAGCcaggUugCCCAAGGa -3'
miRNA:   3'- gCACCUGCaCAa------AUCG----AugGGGUUCC- -5'
3663 5' -50.9 NC_001650.1 + 21406 0.7 0.957835
Target:  5'- aCGUGcccACGUGgc-AGCacgGCCCCGGGGg -3'
miRNA:   3'- -GCACc--UGCACaaaUCGa--UGGGGUUCC- -5'
3663 5' -50.9 NC_001650.1 + 21620 0.74 0.859196
Target:  5'- gGUGGGCGccGUcucugAGCUGCCCgCGGGGc -3'
miRNA:   3'- gCACCUGCa-CAaa---UCGAUGGG-GUUCC- -5'
3663 5' -50.9 NC_001650.1 + 26468 0.72 0.920081
Target:  5'- gCGUGGGCccGUgcGGCUucguguaccuguACCCCGGGGa -3'
miRNA:   3'- -GCACCUGcaCAaaUCGA------------UGGGGUUCC- -5'
3663 5' -50.9 NC_001650.1 + 31302 0.66 0.997227
Target:  5'- aCGgGGGCGcuucauGCgACCCCAGGGa -3'
miRNA:   3'- -GCaCCUGCacaaauCGaUGGGGUUCC- -5'
3663 5' -50.9 NC_001650.1 + 36087 0.66 0.996734
Target:  5'- gGUGGAgGUGUaccAG-UGCCCCucGGa -3'
miRNA:   3'- gCACCUgCACAaa-UCgAUGGGGuuCC- -5'
3663 5' -50.9 NC_001650.1 + 44016 0.66 0.997227
Target:  5'- -aUGGACacGg--AGCUGCCCCuuGGGa -3'
miRNA:   3'- gcACCUGcaCaaaUCGAUGGGGu-UCC- -5'
3663 5' -50.9 NC_001650.1 + 49123 0.68 0.984968
Target:  5'- aCGUGGugGUGgagaccgUGGUcuccgACCUCAAGa -3'
miRNA:   3'- -GCACCugCACaa-----AUCGa----UGGGGUUCc -5'
3663 5' -50.9 NC_001650.1 + 50704 0.66 0.995529
Target:  5'- gGUGGugGUaagugaaaguugGggUAGC-GCCCCGcgAGGa -3'
miRNA:   3'- gCACCugCA------------CaaAUCGaUGGGGU--UCC- -5'
3663 5' -50.9 NC_001650.1 + 56999 0.66 0.998029
Target:  5'- aGUGGaACGgccaGUaggcgcGCUACCCCcGGGa -3'
miRNA:   3'- gCACC-UGCa---CAaau---CGAUGGGGuUCC- -5'
3663 5' -50.9 NC_001650.1 + 57976 0.69 0.981077
Target:  5'- cCG-GGGCGUcgaugGGCUguccgaaccucuGCCCCAGGGa -3'
miRNA:   3'- -GCaCCUGCAcaaa-UCGA------------UGGGGUUCC- -5'
3663 5' -50.9 NC_001650.1 + 58165 0.66 0.998029
Target:  5'- --gGGugGUGgcgaUGGCUGCCgUggGAGGg -3'
miRNA:   3'- gcaCCugCACaa--AUCGAUGGgG--UUCC- -5'
3663 5' -50.9 NC_001650.1 + 59106 1.12 0.00799
Target:  5'- uCGUGGACGUGUUUAGCUACCCCAAGGa -3'
miRNA:   3'- -GCACCUGCACAAAUCGAUGGGGUUCC- -5'
3663 5' -50.9 NC_001650.1 + 59972 0.67 0.993066
Target:  5'- gCGUGucCGUGgggGGCgccucgcCCCCGGGGg -3'
miRNA:   3'- -GCACcuGCACaaaUCGau-----GGGGUUCC- -5'
3663 5' -50.9 NC_001650.1 + 61299 0.71 0.94984
Target:  5'- cCGUGGGCGUG---GGCUAUCUgGAGc -3'
miRNA:   3'- -GCACCUGCACaaaUCGAUGGGgUUCc -5'
3663 5' -50.9 NC_001650.1 + 66658 0.7 0.96491
Target:  5'- -cUGGGCGUGau--GCUGCcguCCCGGGGg -3'
miRNA:   3'- gcACCUGCACaaauCGAUG---GGGUUCC- -5'
3663 5' -50.9 NC_001650.1 + 73553 0.67 0.993447
Target:  5'- --cGGACGUGUccuaCUuucaguccuccaacaGCCCCAGGGg -3'
miRNA:   3'- gcaCCUGCACAaaucGA---------------UGGGGUUCC- -5'
3663 5' -50.9 NC_001650.1 + 77256 0.72 0.920081
Target:  5'- gCGUGGACacg---GGCUcCCCCGAGGc -3'
miRNA:   3'- -GCACCUGcacaaaUCGAuGGGGUUCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.