Results 21 - 40 of 150 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3671 | 3' | -71.2 | NC_001650.1 | + | 3103 | 0.66 | 0.336801 |
Target: 5'- gGGCcaauaGGGuGGGCuaGGGGGUGGgcauaUGGGGu -3' miRNA: 3'- gCCG-----CCC-CCUGggCCCCCGCC-----GCCCC- -5' |
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3671 | 3' | -71.2 | NC_001650.1 | + | 121010 | 0.66 | 0.336135 |
Target: 5'- gGGCaGGGaGACCUcgGGGGGCGcgguccaGUGGGc -3' miRNA: 3'- gCCGcCCC-CUGGG--CCCCCGC-------CGCCCc -5' |
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3671 | 3' | -71.2 | NC_001650.1 | + | 143867 | 0.66 | 0.343515 |
Target: 5'- cCGaGcCGGGGGACgCGGGcucGCGcgucuuGCGGGGc -3' miRNA: 3'- -GC-C-GCCCCCUGgGCCCc--CGC------CGCCCC- -5' |
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3671 | 3' | -71.2 | NC_001650.1 | + | 148843 | 0.66 | 0.334806 |
Target: 5'- -uGCGGGGuccggcgcgugcgaGcGCCUGGGGGaggguGGUGGGGg -3' miRNA: 3'- gcCGCCCC--------------C-UGGGCCCCCg----CCGCCCC- -5' |
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3671 | 3' | -71.2 | NC_001650.1 | + | 133147 | 0.66 | 0.364231 |
Target: 5'- gGGCucgcgccgcgGGGGGACCCucGGGCGGCu--- -3' miRNA: 3'- gCCG----------CCCCCUGGGccCCCGCCGcccc -5' |
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3671 | 3' | -71.2 | NC_001650.1 | + | 155855 | 0.66 | 0.343515 |
Target: 5'- gGGCuGGGGGCguUCGcGGGGCucguggugaGCGGGGu -3' miRNA: 3'- gCCGcCCCCUG--GGC-CCCCGc--------CGCCCC- -5' |
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3671 | 3' | -71.2 | NC_001650.1 | + | 38134 | 0.66 | 0.357231 |
Target: 5'- aCGGCcgGGGGGAUguugugCUGGGccgcGuaGGCGGGGu -3' miRNA: 3'- -GCCG--CCCCCUG------GGCCC----CcgCCGCCCC- -5' |
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3671 | 3' | -71.2 | NC_001650.1 | + | 169810 | 0.66 | 0.336801 |
Target: 5'- gGGCcaauaGGGuGGGCuaGGGGGUGGgcauaUGGGGu -3' miRNA: 3'- gCCG-----CCC-CCUGggCCCCCGCC-----GCCCC- -5' |
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3671 | 3' | -71.2 | NC_001650.1 | + | 155631 | 0.66 | 0.350325 |
Target: 5'- gGGCGGGGag---GGGGGaggagaGGUGGGGa -3' miRNA: 3'- gCCGCCCCcugggCCCCCg-----CCGCCCC- -5' |
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3671 | 3' | -71.2 | NC_001650.1 | + | 75400 | 0.66 | 0.385796 |
Target: 5'- uGGCgcuGGGGGcgagACCCgaucuagcucagGGGGGCgGGCGaGGa -3' miRNA: 3'- gCCG---CCCCC----UGGG------------CCCCCG-CCGC-CCc -5' |
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3671 | 3' | -71.2 | NC_001650.1 | + | 167365 | 0.67 | 0.310907 |
Target: 5'- gGGCGGGGaggGGCUugugugcgugggCGGGGGgagUGGCuGGGGu -3' miRNA: 3'- gCCGCCCC---CUGG------------GCCCCC---GCCG-CCCC- -5' |
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3671 | 3' | -71.2 | NC_001650.1 | + | 57936 | 0.67 | 0.298539 |
Target: 5'- gCGGcCGGGGGcggcACCCucagcugggcgGGaGGcGCGGCcGGGGc -3' miRNA: 3'- -GCC-GCCCCC----UGGG-----------CC-CC-CGCCG-CCCC- -5' |
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3671 | 3' | -71.2 | NC_001650.1 | + | 136808 | 0.67 | 0.321724 |
Target: 5'- gCGGUGGGcuggguuugucuucGGGCCUGGGGcugguGCGGCGauGGa -3' miRNA: 3'- -GCCGCCC--------------CCUGGGCCCC-----CGCCGCc-CC- -5' |
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3671 | 3' | -71.2 | NC_001650.1 | + | 167794 | 0.67 | 0.330183 |
Target: 5'- --aUGGGGGGCC-GGGGGUGGgGuauGGGu -3' miRNA: 3'- gccGCCCCCUGGgCCCCCGCCgC---CCC- -5' |
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3671 | 3' | -71.2 | NC_001650.1 | + | 69065 | 0.67 | 0.330183 |
Target: 5'- uGGCGGccauGGGCCCGGGcGcGCGGCa--- -3' miRNA: 3'- gCCGCCc---CCUGGGCCC-C-CGCCGcccc -5' |
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3671 | 3' | -71.2 | NC_001650.1 | + | 35694 | 0.67 | 0.304675 |
Target: 5'- uGGcCGGGGGGCUCac-GGCcGCGGGGu -3' miRNA: 3'- gCC-GCCCCCUGGGcccCCGcCGCCCC- -5' |
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3671 | 3' | -71.2 | NC_001650.1 | + | 106110 | 0.67 | 0.310907 |
Target: 5'- gGGCGcucGGGCCUggccacaagGGGGGUGGUGGuGGa -3' miRNA: 3'- gCCGCcc-CCUGGG---------CCCCCGCCGCC-CC- -5' |
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3671 | 3' | -71.2 | NC_001650.1 | + | 38296 | 0.67 | 0.323661 |
Target: 5'- -aGCGGGGucCCCGuGGccaaacGGCGGUGuGGGg -3' miRNA: 3'- gcCGCCCCcuGGGC-CC------CCGCCGC-CCC- -5' |
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3671 | 3' | -71.2 | NC_001650.1 | + | 126187 | 0.67 | 0.317236 |
Target: 5'- uGGaaaaaaaGGGaGGAaCCGcggcGGGGCGGCGGGc -3' miRNA: 3'- gCCg------CCC-CCUgGGC----CCCCGCCGCCCc -5' |
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3671 | 3' | -71.2 | NC_001650.1 | + | 30439 | 0.67 | 0.310907 |
Target: 5'- uCGGCGagacGGuGGCCUuucuGGGGCGGCucaGGGGg -3' miRNA: 3'- -GCCGCc---CC-CUGGGc---CCCCGCCG---CCCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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