miRNA display CGI


Results 1 - 20 of 150 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3671 3' -71.2 NC_001650.1 + 148843 0.66 0.334806
Target:  5'- -uGCGGGGuccggcgcgugcgaGcGCCUGGGGGaggguGGUGGGGg -3'
miRNA:   3'- gcCGCCCC--------------C-UGGGCCCCCg----CCGCCCC- -5'
3671 3' -71.2 NC_001650.1 + 131532 0.66 0.343515
Target:  5'- -cGCGGucaacguGGccGCCCGGGGGCuggacGCGGGGc -3'
miRNA:   3'- gcCGCCc------CC--UGGGCCCCCGc----CGCCCC- -5'
3671 3' -71.2 NC_001650.1 + 134551 0.66 0.336801
Target:  5'- gGGCGuGuGGGACaCGGaGGGCccCGGGGg -3'
miRNA:   3'- gCCGC-C-CCCUGgGCC-CCCGccGCCCC- -5'
3671 3' -71.2 NC_001650.1 + 24061 0.66 0.385796
Target:  5'- gGGaCGGGGG-CCUGuGGGCGGCccuGGc -3'
miRNA:   3'- gCC-GCCCCCuGGGCcCCCGCCGc--CCc -5'
3671 3' -71.2 NC_001650.1 + 37567 0.66 0.357231
Target:  5'- uGGUgauGGGGGACgaggCGGugcGGGCGGCGGc- -3'
miRNA:   3'- gCCG---CCCCCUGg---GCC---CCCGCCGCCcc -5'
3671 3' -71.2 NC_001650.1 + 123947 0.66 0.350325
Target:  5'- --aCGuGGGGcCCaCGGGGGUGGaguacaCGGGGg -3'
miRNA:   3'- gccGC-CCCCuGG-GCCCCCGCC------GCCCC- -5'
3671 3' -71.2 NC_001650.1 + 127011 0.66 0.371326
Target:  5'- gGGUcGGGaGCCCGGGGGgcaGuGCGaGGGc -3'
miRNA:   3'- gCCGcCCCcUGGGCCCCCg--C-CGC-CCC- -5'
3671 3' -71.2 NC_001650.1 + 131352 0.66 0.371326
Target:  5'- cCGGCcGGGGGCCCuguacGGGacucuGGCcaagaGGCuGGGGg -3'
miRNA:   3'- -GCCGcCCCCUGGG-----CCC-----CCG-----CCG-CCCC- -5'
3671 3' -71.2 NC_001650.1 + 108857 0.66 0.385796
Target:  5'- aGGuCGGGGGACaggcgcgaggCCGGGuGGuCGGCcaGGa -3'
miRNA:   3'- gCC-GCCCCCUG----------GGCCC-CC-GCCGccCC- -5'
3671 3' -71.2 NC_001650.1 + 159609 0.66 0.378515
Target:  5'- gCGGCGGGGG---CGGuGGGCaa-GGGGg -3'
miRNA:   3'- -GCCGCCCCCuggGCC-CCCGccgCCCC- -5'
3671 3' -71.2 NC_001650.1 + 143100 0.66 0.336801
Target:  5'- cCGGCuGcacGGGCCgGGGcGGCGGCGGc- -3'
miRNA:   3'- -GCCGcCc--CCUGGgCCC-CCGCCGCCcc -5'
3671 3' -71.2 NC_001650.1 + 18093 0.66 0.353076
Target:  5'- gGGCucuaaccucugauauGGGGGAagaaugccuCCCucggcgguGGGGGUGGUGuGGGg -3'
miRNA:   3'- gCCG---------------CCCCCU---------GGG--------CCCCCGCCGC-CCC- -5'
3671 3' -71.2 NC_001650.1 + 121010 0.66 0.336135
Target:  5'- gGGCaGGGaGACCUcgGGGGGCGcgguccaGUGGGc -3'
miRNA:   3'- gCCGcCCC-CUGGG--CCCCCGC-------CGCCCc -5'
3671 3' -71.2 NC_001650.1 + 93339 0.66 0.339475
Target:  5'- -aGCaGcGGGGCCaguacgagcaccugaCGGGGGCGGCcuuuGGGGc -3'
miRNA:   3'- gcCGcC-CCCUGG---------------GCCCCCGCCG----CCCC- -5'
3671 3' -71.2 NC_001650.1 + 29374 0.66 0.364231
Target:  5'- aGGCGcaGcGuCCaGGGGGCGGCGGuGGc -3'
miRNA:   3'- gCCGCccC-CuGGgCCCCCGCCGCC-CC- -5'
3671 3' -71.2 NC_001650.1 + 129980 0.66 0.356536
Target:  5'- uGGCGcGGG-CCCugaGGcugcugaGGGCGGCGcGGGa -3'
miRNA:   3'- gCCGCcCCCuGGG---CC-------CCCGCCGC-CCC- -5'
3671 3' -71.2 NC_001650.1 + 132165 0.66 0.337468
Target:  5'- cCGGCGGGGcGGagaaggugcccgugaCCGGGuucgaGGUGGCcguGGGGu -3'
miRNA:   3'- -GCCGCCCC-CUg--------------GGCCC-----CCGCCG---CCCC- -5'
3671 3' -71.2 NC_001650.1 + 169810 0.66 0.336801
Target:  5'- gGGCcaauaGGGuGGGCuaGGGGGUGGgcauaUGGGGu -3'
miRNA:   3'- gCCG-----CCC-CCUGggCCCCCGCC-----GCCCC- -5'
3671 3' -71.2 NC_001650.1 + 150942 0.66 0.368477
Target:  5'- aGGCGGaggcuuGGGuuuagguucagguUCgGGGGGUGGCGGuGGc -3'
miRNA:   3'- gCCGCC------CCCu------------GGgCCCCCGCCGCC-CC- -5'
3671 3' -71.2 NC_001650.1 + 3103 0.66 0.336801
Target:  5'- gGGCcaauaGGGuGGGCuaGGGGGUGGgcauaUGGGGu -3'
miRNA:   3'- gCCG-----CCC-CCUGggCCCCCGCC-----GCCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.