miRNA display CGI


Results 1 - 20 of 150 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3671 3' -71.2 NC_001650.1 + 61345 1.09 0.000259
Target:  5'- gCGGCGGGGGACCCGGGGGCGGCGGGGg -3'
miRNA:   3'- -GCCGCCCCCUGGGCCCCCGCCGCCCC- -5'
3671 3' -71.2 NC_001650.1 + 58941 0.84 0.019083
Target:  5'- gGGCGcGGGaGGCCCGGGaGGCGGCGGcGGc -3'
miRNA:   3'- gCCGC-CCC-CUGGGCCC-CCGCCGCC-CC- -5'
3671 3' -71.2 NC_001650.1 + 111702 0.83 0.021024
Target:  5'- gCGGCGGGGaucaccaGCCCGGGGGUGGCcuGGGGu -3'
miRNA:   3'- -GCCGCCCCc------UGGGCCCCCGCCG--CCCC- -5'
3671 3' -71.2 NC_001650.1 + 126759 0.83 0.023729
Target:  5'- gCGGCGaGGGGCCCGGGGGaauGGgGGGGa -3'
miRNA:   3'- -GCCGCcCCCUGGGCCCCCg--CCgCCCC- -5'
3671 3' -71.2 NC_001650.1 + 122127 0.82 0.026776
Target:  5'- gGGCGGGGucGGCUCGGGGGCGGgGGcGGc -3'
miRNA:   3'- gCCGCCCC--CUGGGCCCCCGCCgCC-CC- -5'
3671 3' -71.2 NC_001650.1 + 27876 0.82 0.029489
Target:  5'- uCGGUcaGGaGGGACCCcuacguggugacGGGGGUGGCGGGGg -3'
miRNA:   3'- -GCCG--CC-CCCUGGG------------CCCCCGCCGCCCC- -5'
3671 3' -71.2 NC_001650.1 + 121790 0.81 0.030209
Target:  5'- gCGGCGGGGGuaaCGGGGaaggggggaGCGGCGGGGg -3'
miRNA:   3'- -GCCGCCCCCuggGCCCC---------CGCCGCCCC- -5'
3671 3' -71.2 NC_001650.1 + 128061 0.8 0.039356
Target:  5'- aCGGUGGcGGACCCGaGGGGCuacGCGGGGa -3'
miRNA:   3'- -GCCGCCcCCUGGGC-CCCCGc--CGCCCC- -5'
3671 3' -71.2 NC_001650.1 + 98332 0.8 0.041289
Target:  5'- aGGCGGGGGGCgaCGGGGggugugguuGCGGCGaGGGa -3'
miRNA:   3'- gCCGCCCCCUGg-GCCCC---------CGCCGC-CCC- -5'
3671 3' -71.2 NC_001650.1 + 125009 0.79 0.043005
Target:  5'- aGGCucucgaucgccagaGGGGGuCCCGGGGGCggaggacgccgGGCGGGGc -3'
miRNA:   3'- gCCG--------------CCCCCuGGGCCCCCG-----------CCGCCCC- -5'
3671 3' -71.2 NC_001650.1 + 91035 0.79 0.046537
Target:  5'- aGG-GGGGuGACCgucuUGGGGGCGGUGGGGu -3'
miRNA:   3'- gCCgCCCC-CUGG----GCCCCCGCCGCCCC- -5'
3671 3' -71.2 NC_001650.1 + 66860 0.79 0.047662
Target:  5'- uGGCGGGGccgcgggaGGCgCCGGGGGCGGgggcgagcCGGGGg -3'
miRNA:   3'- gCCGCCCC--------CUG-GGCCCCCGCC--------GCCCC- -5'
3671 3' -71.2 NC_001650.1 + 181887 0.78 0.052434
Target:  5'- gCGGCGcGGGGugUCuGGGGGUcGCGGGGu -3'
miRNA:   3'- -GCCGC-CCCCugGG-CCCCCGcCGCCCC- -5'
3671 3' -71.2 NC_001650.1 + 15180 0.78 0.052434
Target:  5'- gCGGCGcGGGGugUCuGGGGGUcGCGGGGu -3'
miRNA:   3'- -GCCGC-CCCCugGG-CCCCCGcCGCCCC- -5'
3671 3' -71.2 NC_001650.1 + 165121 0.78 0.05486
Target:  5'- gCGGCGGccgcgguGGGGCCCGGGGGguggggUGGCGGcGGc -3'
miRNA:   3'- -GCCGCC-------CCCUGGGCCCCC------GCCGCC-CC- -5'
3671 3' -71.2 NC_001650.1 + 120813 0.77 0.064927
Target:  5'- gGGCGGGGGuGCCCucGGGCGGCGGc- -3'
miRNA:   3'- gCCGCCCCC-UGGGccCCCGCCGCCcc -5'
3671 3' -71.2 NC_001650.1 + 165727 0.75 0.08198
Target:  5'- aGGUuuuucucGGGGGGCCC-GGGGCGGCucuuaggccuaGGGGg -3'
miRNA:   3'- gCCG-------CCCCCUGGGcCCCCGCCG-----------CCCC- -5'
3671 3' -71.2 NC_001650.1 + 14660 0.75 0.084121
Target:  5'- gGGCaGGGGuCCaagGGGGGUGGCaGGGGu -3'
miRNA:   3'- gCCGcCCCCuGGg--CCCCCGCCG-CCCC- -5'
3671 3' -71.2 NC_001650.1 + 181367 0.75 0.084121
Target:  5'- gGGCaGGGGuCCaagGGGGGUGGCaGGGGu -3'
miRNA:   3'- gCCGcCCCCuGGg--CCCCCGCCG-CCCC- -5'
3671 3' -71.2 NC_001650.1 + 79199 0.75 0.090232
Target:  5'- gGGCGcuGGaGGACCCGGGGGCuGUuagaGGGGu -3'
miRNA:   3'- gCCGC--CC-CCUGGGCCCCCGcCG----CCCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.