miRNA display CGI


Results 1 - 20 of 150 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3671 3' -71.2 NC_001650.1 + 658 0.67 0.310907
Target:  5'- gGGCGGGGaggGGCUugugugcgugggCGGGGGgagUGGCuGGGGu -3'
miRNA:   3'- gCCGCCCC---CUGG------------GCCCCC---GCCG-CCCC- -5'
3671 3' -71.2 NC_001650.1 + 839 0.71 0.163269
Target:  5'- uCGGgGgagaccgaccaauGGGGGCCCGGGGGagGGCGGc- -3'
miRNA:   3'- -GCCgC-------------CCCCUGGGCCCCCg-CCGCCcc -5'
3671 3' -71.2 NC_001650.1 + 1087 0.67 0.330183
Target:  5'- --aUGGGGGGCC-GGGGGUGGgGuauGGGu -3'
miRNA:   3'- gccGCCCCCUGGgCCCCCGCCgC---CCC- -5'
3671 3' -71.2 NC_001650.1 + 1483 0.73 0.117503
Target:  5'- gGGCGucccaucuagccaauGGGGGCCCGGGG--GGCGGGa -3'
miRNA:   3'- gCCGC---------------CCCCUGGGCCCCcgCCGCCCc -5'
3671 3' -71.2 NC_001650.1 + 3103 0.66 0.336801
Target:  5'- gGGCcaauaGGGuGGGCuaGGGGGUGGgcauaUGGGGu -3'
miRNA:   3'- gCCG-----CCC-CCUGggCCCCCGCC-----GCCCC- -5'
3671 3' -71.2 NC_001650.1 + 5043 0.74 0.111187
Target:  5'- gCGGaCGGGGGucccUCCGGGGGUGG-GGGc -3'
miRNA:   3'- -GCC-GCCCCCu---GGGCCCCCGCCgCCCc -5'
3671 3' -71.2 NC_001650.1 + 6990 0.66 0.339475
Target:  5'- uGGCccaaugggggauaagGGGGGACCUGGGuugccaGGCaGacuaGGGGg -3'
miRNA:   3'- gCCG---------------CCCCCUGGGCCC------CCGcCg---CCCC- -5'
3671 3' -71.2 NC_001650.1 + 8079 0.72 0.141042
Target:  5'- -uGUGGGGGGCUCagaugcauaugcauaGGGGGCGGuCGGGc -3'
miRNA:   3'- gcCGCCCCCUGGG---------------CCCCCGCC-GCCCc -5'
3671 3' -71.2 NC_001650.1 + 8264 0.72 0.146242
Target:  5'- aGGCGGGGG-CCaaugGGGGGCcuGUGGGu -3'
miRNA:   3'- gCCGCCCCCuGGg---CCCCCGc-CGCCCc -5'
3671 3' -71.2 NC_001650.1 + 8563 0.75 0.096763
Target:  5'- aGuGUGGGGGGuggcauucacCCCcGGGGUGGUGGGGg -3'
miRNA:   3'- gC-CGCCCCCU----------GGGcCCCCGCCGCCCC- -5'
3671 3' -71.2 NC_001650.1 + 9123 0.67 0.298539
Target:  5'- -cGCccGGuGACCUGGGGGUGG-GGGGa -3'
miRNA:   3'- gcCGccCC-CUGGGCCCCCGCCgCCCC- -5'
3671 3' -71.2 NC_001650.1 + 12162 0.67 0.298539
Target:  5'- gGGCgcauGGGGGuCuuGGGGGUauaGGUgcauGGGGg -3'
miRNA:   3'- gCCG----CCCCCuGggCCCCCG---CCG----CCCC- -5'
3671 3' -71.2 NC_001650.1 + 14146 0.68 0.274954
Target:  5'- gGGaUGGGGGcuccaugguCCCGGGGGUccaGG-GGGGc -3'
miRNA:   3'- gCC-GCCCCCu--------GGGCCCCCG---CCgCCCC- -5'
3671 3' -71.2 NC_001650.1 + 14215 0.7 0.208557
Target:  5'- aGGUGGGcGGG-CgGGcGGGCaGGUGGGGa -3'
miRNA:   3'- gCCGCCC-CCUgGgCC-CCCG-CCGCCCC- -5'
3671 3' -71.2 NC_001650.1 + 14660 0.75 0.084121
Target:  5'- gGGCaGGGGuCCaagGGGGGUGGCaGGGGu -3'
miRNA:   3'- gCCGcCCCCuGGg--CCCCCGCCG-CCCC- -5'
3671 3' -71.2 NC_001650.1 + 14689 0.68 0.280707
Target:  5'- -cGCGGacccGGACCCGGcGGGCGaGCGaGGu -3'
miRNA:   3'- gcCGCCc---CCUGGGCC-CCCGC-CGC-CCc -5'
3671 3' -71.2 NC_001650.1 + 15180 0.78 0.052434
Target:  5'- gCGGCGcGGGGugUCuGGGGGUcGCGGGGu -3'
miRNA:   3'- -GCCGC-CCCCugGG-CCCCCGcCGCCCC- -5'
3671 3' -71.2 NC_001650.1 + 16734 0.68 0.274954
Target:  5'- uGGUGGGGuGGCCaucuugGuGGGGUGGCcaucuugguGGGGu -3'
miRNA:   3'- gCCGCCCC-CUGGg-----C-CCCCGCCG---------CCCC- -5'
3671 3' -71.2 NC_001650.1 + 17390 0.68 0.269296
Target:  5'- uGGUGGGcGACCaccuCGGGGGUGGCcaucucaguGGGa -3'
miRNA:   3'- gCCGCCCcCUGG----GCCCCCGCCG---------CCCc -5'
3671 3' -71.2 NC_001650.1 + 18093 0.66 0.353076
Target:  5'- gGGCucuaaccucugauauGGGGGAagaaugccuCCCucggcgguGGGGGUGGUGuGGGg -3'
miRNA:   3'- gCCG---------------CCCCCU---------GGG--------CCCCCGCCGC-CCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.