miRNA display CGI


Results 1 - 20 of 150 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3671 3' -71.2 NC_001650.1 + 147758 0.73 0.124721
Target:  5'- uGGUuuuGGGGGACCCguGGaGGGCGacCGGGGa -3'
miRNA:   3'- gCCG---CCCCCUGGG--CC-CCCGCc-GCCCC- -5'
3671 3' -71.2 NC_001650.1 + 79199 0.75 0.090232
Target:  5'- gGGCGcuGGaGGACCCGGGGGCuGUuagaGGGGu -3'
miRNA:   3'- gCCGC--CC-CCUGGGCCCCCGcCG----CCCC- -5'
3671 3' -71.2 NC_001650.1 + 30780 0.74 0.099038
Target:  5'- gGGCaGGGGGACgCGGGGGa--CGGGGc -3'
miRNA:   3'- gCCG-CCCCCUGgGCCCCCgccGCCCC- -5'
3671 3' -71.2 NC_001650.1 + 50241 0.74 0.10207
Target:  5'- gGGCGGggaccaugcgcgacaGGGgcgccucucugcGCCCGGGagcgggcGGCGGCGGGGg -3'
miRNA:   3'- gCCGCC---------------CCC------------UGGGCCC-------CCGCCGCCCC- -5'
3671 3' -71.2 NC_001650.1 + 21781 0.74 0.102307
Target:  5'- uGGUGGGGGACgCCGGGGaG-GGCgccggccgaggccccGGGGa -3'
miRNA:   3'- gCCGCCCCCUG-GGCCCC-CgCCG---------------CCCC- -5'
3671 3' -71.2 NC_001650.1 + 88697 0.74 0.111187
Target:  5'- gCGGCGcGGGcGAUggagCGGGGGCGGgaGGGGg -3'
miRNA:   3'- -GCCGC-CCC-CUGg---GCCCCCGCCg-CCCC- -5'
3671 3' -71.2 NC_001650.1 + 5043 0.74 0.111187
Target:  5'- gCGGaCGGGGGucccUCCGGGGGUGG-GGGc -3'
miRNA:   3'- -GCC-GCCCCCu---GGGCCCCCGCCgCCCc -5'
3671 3' -71.2 NC_001650.1 + 171750 0.74 0.111187
Target:  5'- gCGGaCGGGGGucccUCCGGGGGUGG-GGGc -3'
miRNA:   3'- -GCC-GCCCCCu---GGGCCCCCGCCgCCCc -5'
3671 3' -71.2 NC_001650.1 + 28361 0.73 0.121897
Target:  5'- gCGGUGGGGGucucGCCCGGGGaGUGGCu--- -3'
miRNA:   3'- -GCCGCCCCC----UGGGCCCC-CGCCGcccc -5'
3671 3' -71.2 NC_001650.1 + 165727 0.75 0.08198
Target:  5'- aGGUuuuucucGGGGGGCCC-GGGGCGGCucuuaggccuaGGGGg -3'
miRNA:   3'- gCCG-------CCCCCUGGGcCCCCGCCG-----------CCCC- -5'
3671 3' -71.2 NC_001650.1 + 181887 0.78 0.052434
Target:  5'- gCGGCGcGGGGugUCuGGGGGUcGCGGGGu -3'
miRNA:   3'- -GCCGC-CCCCugGG-CCCCCGcCGCCCC- -5'
3671 3' -71.2 NC_001650.1 + 15180 0.78 0.052434
Target:  5'- gCGGCGcGGGGugUCuGGGGGUcGCGGGGu -3'
miRNA:   3'- -GCCGC-CCCCugGG-CCCCCGcCGCCCC- -5'
3671 3' -71.2 NC_001650.1 + 126759 0.83 0.023729
Target:  5'- gCGGCGaGGGGCCCGGGGGaauGGgGGGGa -3'
miRNA:   3'- -GCCGCcCCCUGGGCCCCCg--CCgCCCC- -5'
3671 3' -71.2 NC_001650.1 + 122127 0.82 0.026776
Target:  5'- gGGCGGGGucGGCUCGGGGGCGGgGGcGGc -3'
miRNA:   3'- gCCGCCCC--CUGGGCCCCCGCCgCC-CC- -5'
3671 3' -71.2 NC_001650.1 + 27876 0.82 0.029489
Target:  5'- uCGGUcaGGaGGGACCCcuacguggugacGGGGGUGGCGGGGg -3'
miRNA:   3'- -GCCG--CC-CCCUGGG------------CCCCCGCCGCCCC- -5'
3671 3' -71.2 NC_001650.1 + 121790 0.81 0.030209
Target:  5'- gCGGCGGGGGuaaCGGGGaaggggggaGCGGCGGGGg -3'
miRNA:   3'- -GCCGCCCCCuggGCCCC---------CGCCGCCCC- -5'
3671 3' -71.2 NC_001650.1 + 128061 0.8 0.039356
Target:  5'- aCGGUGGcGGACCCGaGGGGCuacGCGGGGa -3'
miRNA:   3'- -GCCGCCcCCUGGGC-CCCCGc--CGCCCC- -5'
3671 3' -71.2 NC_001650.1 + 125009 0.79 0.043005
Target:  5'- aGGCucucgaucgccagaGGGGGuCCCGGGGGCggaggacgccgGGCGGGGc -3'
miRNA:   3'- gCCG--------------CCCCCuGGGCCCCCG-----------CCGCCCC- -5'
3671 3' -71.2 NC_001650.1 + 91035 0.79 0.046537
Target:  5'- aGG-GGGGuGACCgucuUGGGGGCGGUGGGGu -3'
miRNA:   3'- gCCgCCCC-CUGG----GCCCCCGCCGCCCC- -5'
3671 3' -71.2 NC_001650.1 + 66860 0.79 0.047662
Target:  5'- uGGCGGGGccgcgggaGGCgCCGGGGGCGGgggcgagcCGGGGg -3'
miRNA:   3'- gCCGCCCC--------CUG-GGCCCCCGCC--------GCCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.