miRNA display CGI


Results 41 - 60 of 150 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3671 3' -71.2 NC_001650.1 + 30439 0.67 0.310907
Target:  5'- uCGGCGagacGGuGGCCUuucuGGGGCGGCucaGGGGg -3'
miRNA:   3'- -GCCGCc---CC-CUGGGc---CCCCGCCG---CCCC- -5'
3671 3' -71.2 NC_001650.1 + 658 0.67 0.310907
Target:  5'- gGGCGGGGaggGGCUugugugcgugggCGGGGGgagUGGCuGGGGu -3'
miRNA:   3'- gCCGCCCC---CUGG------------GCCCCC---GCCG-CCCC- -5'
3671 3' -71.2 NC_001650.1 + 167365 0.67 0.310907
Target:  5'- gGGCGGGGaggGGCUugugugcgugggCGGGGGgagUGGCuGGGGu -3'
miRNA:   3'- gCCGCCCC---CUGG------------GCCCCC---GCCG-CCCC- -5'
3671 3' -71.2 NC_001650.1 + 35694 0.67 0.304675
Target:  5'- uGGcCGGGGGGCUCac-GGCcGCGGGGu -3'
miRNA:   3'- gCC-GCCCCCUGGGcccCCGcCGCCCC- -5'
3671 3' -71.2 NC_001650.1 + 114482 0.67 0.304057
Target:  5'- uGGCGGccuucGGGACCgggaugcUGGGGGCGGCc--- -3'
miRNA:   3'- gCCGCC-----CCCUGG-------GCCCCCGCCGcccc -5'
3671 3' -71.2 NC_001650.1 + 157535 0.67 0.30037
Target:  5'- aGGaGGGGcugcacuucguggacGACCUGGGcgagggcGGgGGCGGGGa -3'
miRNA:   3'- gCCgCCCC---------------CUGGGCCC-------CCgCCGCCCC- -5'
3671 3' -71.2 NC_001650.1 + 9123 0.67 0.298539
Target:  5'- -cGCccGGuGACCUGGGGGUGG-GGGGa -3'
miRNA:   3'- gcCGccCC-CUGGGCCCCCGCCgCCCC- -5'
3671 3' -71.2 NC_001650.1 + 175830 0.67 0.298539
Target:  5'- -cGCccGGuGACCUGGGGGUGG-GGGGa -3'
miRNA:   3'- gcCGccCC-CUGGGCCCCCGCCgCCCC- -5'
3671 3' -71.2 NC_001650.1 + 57936 0.67 0.298539
Target:  5'- gCGGcCGGGGGcggcACCCucagcugggcgGGaGGcGCGGCcGGGGc -3'
miRNA:   3'- -GCC-GCCCCC----UGGG-----------CC-CC-CGCCG-CCCC- -5'
3671 3' -71.2 NC_001650.1 + 88401 0.67 0.298539
Target:  5'- aGGaGGGGG---UGGuGGCGGCGGGGa -3'
miRNA:   3'- gCCgCCCCCuggGCCcCCGCCGCCCC- -5'
3671 3' -71.2 NC_001650.1 + 12162 0.67 0.298539
Target:  5'- gGGCgcauGGGGGuCuuGGGGGUauaGGUgcauGGGGg -3'
miRNA:   3'- gCCG----CCCCCuGggCCCCCG---CCG----CCCC- -5'
3671 3' -71.2 NC_001650.1 + 159019 0.67 0.298539
Target:  5'- gGGCGGGGGACCUGacccuccucaGGGGCaggaGCGa-- -3'
miRNA:   3'- gCCGCCCCCUGGGC----------CCCCGc---CGCccc -5'
3671 3' -71.2 NC_001650.1 + 178869 0.67 0.298539
Target:  5'- gGGCgcauGGGGGuCuuGGGGGUauaGGUgcauGGGGg -3'
miRNA:   3'- gCCG----CCCCCuGggCCCCCG---CCG----CCCC- -5'
3671 3' -71.2 NC_001650.1 + 30993 0.67 0.297931
Target:  5'- aGGCGcGGaugcacaggagcaGGGCCUGgcuGGGGCGG-GGGGc -3'
miRNA:   3'- gCCGC-CC-------------CCUGGGC---CCCCGCCgCCCC- -5'
3671 3' -71.2 NC_001650.1 + 119229 0.67 0.292499
Target:  5'- uCGGCGGGGuggGACCUGGaGGCcaacaggauGGCcGGGa -3'
miRNA:   3'- -GCCGCCCC---CUGGGCCcCCG---------CCGcCCC- -5'
3671 3' -71.2 NC_001650.1 + 89070 0.68 0.286556
Target:  5'- aGGCGGGuGACCgCGGacuGGCucgucGCGGGGg -3'
miRNA:   3'- gCCGCCCcCUGG-GCCc--CCGc----CGCCCC- -5'
3671 3' -71.2 NC_001650.1 + 136727 0.68 0.280707
Target:  5'- uGGCGGuGGGGgCgGuGGcGGCggcgaccuucuuGGCGGGGg -3'
miRNA:   3'- gCCGCC-CCCUgGgC-CC-CCG------------CCGCCCC- -5'
3671 3' -71.2 NC_001650.1 + 181396 0.68 0.280707
Target:  5'- -cGCGGacccGGACCCGGcGGGCGaGCGaGGu -3'
miRNA:   3'- gcCGCCc---CCUGGGCC-CCCGC-CGC-CCc -5'
3671 3' -71.2 NC_001650.1 + 14689 0.68 0.280707
Target:  5'- -cGCGGacccGGACCCGGcGGGCGaGCGaGGu -3'
miRNA:   3'- gcCGCCc---CCUGGGCC-CCCGC-CGC-CCc -5'
3671 3' -71.2 NC_001650.1 + 126470 0.68 0.280128
Target:  5'- gCGcGUGGGGGA--CGGGGGUccgucgaGGaCGGGGa -3'
miRNA:   3'- -GC-CGCCCCCUggGCCCCCG-------CC-GCCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.