miRNA display CGI


Results 21 - 40 of 150 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3671 3' -71.2 NC_001650.1 + 21781 0.74 0.102307
Target:  5'- uGGUGGGGGACgCCGGGGaG-GGCgccggccgaggccccGGGGa -3'
miRNA:   3'- gCCGCCCCCUG-GGCCCC-CgCCG---------------CCCC- -5'
3671 3' -71.2 NC_001650.1 + 22332 0.72 0.147569
Target:  5'- uCGGCuGGGGcaacgugcugggccuGcACCUGGGGGUGGUGGGc -3'
miRNA:   3'- -GCCG-CCCC---------------C-UGGGCCCCCGCCGCCCc -5'
3671 3' -71.2 NC_001650.1 + 22734 0.7 0.186944
Target:  5'- aGGCGcGGGuGGCCCcggugaagcuGuGGGGCcucgaGGCGGGGc -3'
miRNA:   3'- gCCGC-CCC-CUGGG----------C-CCCCG-----CCGCCCC- -5'
3671 3' -71.2 NC_001650.1 + 23403 0.72 0.155414
Target:  5'- cCGGCGucgcugcuguuguaGGGGACCCuggaGGGcGCGGUGGGc -3'
miRNA:   3'- -GCCGC--------------CCCCUGGGc---CCC-CGCCGCCCc -5'
3671 3' -71.2 NC_001650.1 + 24061 0.66 0.385796
Target:  5'- gGGaCGGGGG-CCUGuGGGCGGCccuGGc -3'
miRNA:   3'- gCC-GCCCCCuGGGCcCCCGCCGc--CCc -5'
3671 3' -71.2 NC_001650.1 + 27466 0.68 0.274954
Target:  5'- uGGCccGGGuccagaagcaGGccuccaACCgGGGcGGCGGCGGGGa -3'
miRNA:   3'- gCCG--CCC----------CC------UGGgCCC-CCGCCGCCCC- -5'
3671 3' -71.2 NC_001650.1 + 27876 0.82 0.029489
Target:  5'- uCGGUcaGGaGGGACCCcuacguggugacGGGGGUGGCGGGGg -3'
miRNA:   3'- -GCCG--CC-CCCUGGG------------CCCCCGCCGCCCC- -5'
3671 3' -71.2 NC_001650.1 + 28361 0.73 0.121897
Target:  5'- gCGGUGGGGGucucGCCCGGGGaGUGGCu--- -3'
miRNA:   3'- -GCCGCCCCC----UGGGCCCC-CGCCGcccc -5'
3671 3' -71.2 NC_001650.1 + 29374 0.66 0.364231
Target:  5'- aGGCGcaGcGuCCaGGGGGCGGCGGuGGc -3'
miRNA:   3'- gCCGCccC-CuGGgCCCCCGCCGCC-CC- -5'
3671 3' -71.2 NC_001650.1 + 30439 0.67 0.310907
Target:  5'- uCGGCGagacGGuGGCCUuucuGGGGCGGCucaGGGGg -3'
miRNA:   3'- -GCCGCc---CC-CUGGGc---CCCCGCCG---CCCC- -5'
3671 3' -71.2 NC_001650.1 + 30689 0.7 0.208557
Target:  5'- -cGCGGGGcGAgCgGGaGGGgGGCGGGa -3'
miRNA:   3'- gcCGCCCC-CUgGgCC-CCCgCCGCCCc -5'
3671 3' -71.2 NC_001650.1 + 30780 0.74 0.099038
Target:  5'- gGGCaGGGGGACgCGGGGGa--CGGGGc -3'
miRNA:   3'- gCCG-CCCCCUGgGCCCCCgccGCCCC- -5'
3671 3' -71.2 NC_001650.1 + 30993 0.67 0.297931
Target:  5'- aGGCGcGGaugcacaggagcaGGGCCUGgcuGGGGCGG-GGGGc -3'
miRNA:   3'- gCCGC-CC-------------CCUGGGC---CCCCGCCgCCCC- -5'
3671 3' -71.2 NC_001650.1 + 35279 0.73 0.127605
Target:  5'- gGGCGGGGcGGgCCGGGGaCGgGCGcGGGc -3'
miRNA:   3'- gCCGCCCC-CUgGGCCCCcGC-CGC-CCC- -5'
3671 3' -71.2 NC_001650.1 + 35694 0.67 0.304675
Target:  5'- uGGcCGGGGGGCUCac-GGCcGCGGGGu -3'
miRNA:   3'- gCC-GCCCCCUGGGcccCCGcCGCCCC- -5'
3671 3' -71.2 NC_001650.1 + 35872 0.73 0.127605
Target:  5'- -cGCGGGGGACCUGgaguuucacgcGGGGCGgGCGGa- -3'
miRNA:   3'- gcCGCCCCCUGGGC-----------CCCCGC-CGCCcc -5'
3671 3' -71.2 NC_001650.1 + 36487 0.71 0.17847
Target:  5'- aGGCa-GGGACCgGGGGGCagggccaGGCuGGGGc -3'
miRNA:   3'- gCCGccCCCUGGgCCCCCG-------CCG-CCCC- -5'
3671 3' -71.2 NC_001650.1 + 37567 0.66 0.357231
Target:  5'- uGGUgauGGGGGACgaggCGGugcGGGCGGCGGc- -3'
miRNA:   3'- gCCG---CCCCCUGg---GCC---CCCGCCGCCcc -5'
3671 3' -71.2 NC_001650.1 + 38134 0.66 0.357231
Target:  5'- aCGGCcgGGGGGAUguugugCUGGGccgcGuaGGCGGGGu -3'
miRNA:   3'- -GCCG--CCCCCUG------GGCCC----CcgCCGCCCC- -5'
3671 3' -71.2 NC_001650.1 + 38296 0.67 0.323661
Target:  5'- -aGCGGGGucCCCGuGGccaaacGGCGGUGuGGGg -3'
miRNA:   3'- gcCGCCCCcuGGGC-CC------CCGCCGC-CCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.