miRNA display CGI


Results 21 - 40 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3684 5' -60.7 NC_001650.1 + 113583 0.66 0.695002
Target:  5'- gGUgUGCUCCACCAGgUgGGCCUUg-- -3'
miRNA:   3'- -CAgACGGGGUGGUCgAaCCGGGAgag -5'
3684 5' -60.7 NC_001650.1 + 122743 0.67 0.665356
Target:  5'- uUCUcCCUgACCGGCacuucggGGCCCUCUUc -3'
miRNA:   3'- cAGAcGGGgUGGUCGaa-----CCGGGAGAG- -5'
3684 5' -60.7 NC_001650.1 + 130520 0.71 0.443876
Target:  5'- ---cGCUCUgauuggucgagaGCCGGC-UGGCCCUCUCg -3'
miRNA:   3'- cagaCGGGG------------UGGUCGaACCGGGAGAG- -5'
3684 5' -60.7 NC_001650.1 + 130982 0.66 0.695002
Target:  5'- cGUCUucgaggcggcGCCCCugUcGCg-GGCCCUCUa -3'
miRNA:   3'- -CAGA----------CGGGGugGuCGaaCCGGGAGAg -5'
3684 5' -60.7 NC_001650.1 + 133565 0.66 0.724199
Target:  5'- gGUCagGCCCCccGCgGGCaccGGCCC-CUCg -3'
miRNA:   3'- -CAGa-CGGGG--UGgUCGaa-CCGGGaGAG- -5'
3684 5' -60.7 NC_001650.1 + 134320 0.68 0.575846
Target:  5'- cGUCUuCCCCcCCGGCgccccccgcgGGCCCUC-Cg -3'
miRNA:   3'- -CAGAcGGGGuGGUCGaa--------CCGGGAGaG- -5'
3684 5' -60.7 NC_001650.1 + 135035 0.7 0.461765
Target:  5'- ---cGCCCUcgGCCAGCgcgcGGCCCUCg- -3'
miRNA:   3'- cagaCGGGG--UGGUCGaa--CCGGGAGag -5'
3684 5' -60.7 NC_001650.1 + 135932 0.69 0.546454
Target:  5'- -cUUGgC-CACCAGCUUGGCCCUgUg -3'
miRNA:   3'- caGACgGgGUGGUCGAACCGGGAgAg -5'
3684 5' -60.7 NC_001650.1 + 138680 0.72 0.35074
Target:  5'- uGUCUGCCagcauggccccuguCUGCCAGCaUGGCCCcugUCUCc -3'
miRNA:   3'- -CAGACGG--------------GGUGGUCGaACCGGG---AGAG- -5'
3684 5' -60.7 NC_001650.1 + 138755 0.74 0.287089
Target:  5'- uGUCUGCCagcauggccccuguCUGCCAGCaUGGCCCcugUCUCa -3'
miRNA:   3'- -CAGACGG--------------GGUGGUCGaACCGGG---AGAG- -5'
3684 5' -60.7 NC_001650.1 + 140743 0.69 0.545482
Target:  5'- cUCaGCCgCGCUcugauuggucgagAGCUagcUGGCCCUCUCg -3'
miRNA:   3'- cAGaCGGgGUGG-------------UCGA---ACCGGGAGAG- -5'
3684 5' -60.7 NC_001650.1 + 142258 0.68 0.566003
Target:  5'- cUCgGaCCCCGCguGCgaggUGGCCUUCUUc -3'
miRNA:   3'- cAGaC-GGGGUGguCGa---ACCGGGAGAG- -5'
3684 5' -60.7 NC_001650.1 + 143670 0.71 0.392662
Target:  5'- ---cGUCCC-CCGGCUcGGUCCUCUCc -3'
miRNA:   3'- cagaCGGGGuGGUCGAaCCGGGAGAG- -5'
3684 5' -60.7 NC_001650.1 + 153208 0.67 0.645451
Target:  5'- ---cGCCCCccgccCCAGCcaGGCCCUgCUCc -3'
miRNA:   3'- cagaCGGGGu----GGUCGaaCCGGGA-GAG- -5'
3684 5' -60.7 NC_001650.1 + 153388 0.72 0.384507
Target:  5'- gGUgUGCCCCGCCAGCacgcucagGGagCUCUCg -3'
miRNA:   3'- -CAgACGGGGUGGUCGaa------CCggGAGAG- -5'
3684 5' -60.7 NC_001650.1 + 156202 0.66 0.724199
Target:  5'- -aCUGCCCgGCCAG---GGCCaUCUCc -3'
miRNA:   3'- caGACGGGgUGGUCgaaCCGGgAGAG- -5'
3684 5' -60.7 NC_001650.1 + 156629 0.66 0.704796
Target:  5'- ---cGCCCUcuCCAGCUgGGCCCUgUa -3'
miRNA:   3'- cagaCGGGGu-GGUCGAaCCGGGAgAg -5'
3684 5' -60.7 NC_001650.1 + 157305 0.66 0.68516
Target:  5'- cUCUaCCaCCACCAGC-UGGCcgcgguacagCCUCUCc -3'
miRNA:   3'- cAGAcGG-GGUGGUCGaACCG----------GGAGAG- -5'
3684 5' -60.7 NC_001650.1 + 158105 0.75 0.229058
Target:  5'- -cCUGCCCCugCAGCUggggcUGGCCCa--- -3'
miRNA:   3'- caGACGGGGugGUCGA-----ACCGGGagag -5'
3684 5' -60.7 NC_001650.1 + 160187 0.77 0.179928
Target:  5'- cGUCgUGCCCCgagacgGCCAGCcucUUGGCCCUCa- -3'
miRNA:   3'- -CAG-ACGGGG------UGGUCG---AACCGGGAGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.