miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3684 5' -60.7 NC_001650.1 + 5909 0.68 0.615536
Target:  5'- aGUCUGCCCagcaACCAG---GGCCUUCa- -3'
miRNA:   3'- -CAGACGGGg---UGGUCgaaCCGGGAGag -5'
3684 5' -60.7 NC_001650.1 + 6528 0.68 0.615536
Target:  5'- aGUCUGCCCagcaACCAG---GGCCUUCa- -3'
miRNA:   3'- -CAGACGGGg---UGGUCgaaCCGGGAGag -5'
3684 5' -60.7 NC_001650.1 + 6651 0.68 0.615536
Target:  5'- aGUCUGCCCagcaACCAG---GGCCUUCa- -3'
miRNA:   3'- -CAGACGGGg---UGGUCgaaCCGGGAGag -5'
3684 5' -60.7 NC_001650.1 + 27075 0.7 0.452773
Target:  5'- uUCgagGCCCacuaCACCAGCcUGGCCCaggcgCUCa -3'
miRNA:   3'- cAGa--CGGG----GUGGUCGaACCGGGa----GAG- -5'
3684 5' -60.7 NC_001650.1 + 27584 0.71 0.442992
Target:  5'- -cCUGCCCUccuucccgggcguGCCcGCcucGGCCCUCUCg -3'
miRNA:   3'- caGACGGGG-------------UGGuCGaa-CCGGGAGAG- -5'
3684 5' -60.7 NC_001650.1 + 38711 0.66 0.698926
Target:  5'- ---aGCCCCugaagcuCCAGCUgaccaggagcccccGGCCCUUUCc -3'
miRNA:   3'- cagaCGGGGu------GGUCGAa-------------CCGGGAGAG- -5'
3684 5' -60.7 NC_001650.1 + 52066 0.69 0.53676
Target:  5'- cUCcGCCCCGCCGGCcucgguggGGCCCa--- -3'
miRNA:   3'- cAGaCGGGGUGGUCGaa------CCGGGagag -5'
3684 5' -60.7 NC_001650.1 + 52678 0.71 0.409306
Target:  5'- ---cGCCCCAgCAGggaCUUGGgCCUCUCg -3'
miRNA:   3'- cagaCGGGGUgGUC---GAACCgGGAGAG- -5'
3684 5' -60.7 NC_001650.1 + 54710 0.69 0.546454
Target:  5'- cUCgGCCuCCuucuCCAGCUUGGCCUccgccucccucaUCUCc -3'
miRNA:   3'- cAGaCGG-GGu---GGUCGAACCGGG------------AGAG- -5'
3684 5' -60.7 NC_001650.1 + 56330 0.66 0.68516
Target:  5'- cUUUGCCCCuugcuCCAGUUUGcagguuCCCUCUUu -3'
miRNA:   3'- cAGACGGGGu----GGUCGAACc-----GGGAGAG- -5'
3684 5' -60.7 NC_001650.1 + 59988 0.74 0.282539
Target:  5'- uUCUGCCUccucuuCACCAGCUucUGGCCCacCUCu -3'
miRNA:   3'- cAGACGGG------GUGGUCGA--ACCGGGa-GAG- -5'
3684 5' -60.7 NC_001650.1 + 68964 0.67 0.675275
Target:  5'- -cCUGCCCgGCCuGGCUccggGGuCCUUCUUg -3'
miRNA:   3'- caGACGGGgUGG-UCGAa---CC-GGGAGAG- -5'
3684 5' -60.7 NC_001650.1 + 71978 0.66 0.714531
Target:  5'- aUCUGCCagCACCugGGCggggcGGCCgUCUCc -3'
miRNA:   3'- cAGACGGg-GUGG--UCGaa---CCGGgAGAG- -5'
3684 5' -60.7 NC_001650.1 + 95010 0.67 0.665356
Target:  5'- -gUUGCCgCCGCCcGCccUGGCCCgcCUCa -3'
miRNA:   3'- caGACGG-GGUGGuCGa-ACCGGGa-GAG- -5'
3684 5' -60.7 NC_001650.1 + 105896 0.66 0.68516
Target:  5'- -cCUGauCUCgGCCAGCUUGccGUCCUCUCu -3'
miRNA:   3'- caGAC--GGGgUGGUCGAAC--CGGGAGAG- -5'
3684 5' -60.7 NC_001650.1 + 106339 0.71 0.426383
Target:  5'- cGUgaGCUCCaggACCAGCgcGGCCUUCUCc -3'
miRNA:   3'- -CAgaCGGGG---UGGUCGaaCCGGGAGAG- -5'
3684 5' -60.7 NC_001650.1 + 106373 0.66 0.733792
Target:  5'- cUCUGCCCCugcgaguCCAGgUUG-CCCgcCUCg -3'
miRNA:   3'- cAGACGGGGu------GGUCgAACcGGGa-GAG- -5'
3684 5' -60.7 NC_001650.1 + 107368 0.7 0.498635
Target:  5'- -gCUGCagaUCGCCAGCUgcgcggcGGCCCUCa- -3'
miRNA:   3'- caGACGg--GGUGGUCGAa------CCGGGAGag -5'
3684 5' -60.7 NC_001650.1 + 108907 0.67 0.655413
Target:  5'- -cCUGCgUCCACUAcGCggagcUGGCCUUCUCc -3'
miRNA:   3'- caGACG-GGGUGGU-CGa----ACCGGGAGAG- -5'
3684 5' -60.7 NC_001650.1 + 111497 1.09 0.000976
Target:  5'- cGUCUGCCCCACCAGCUUGGCCCUCUCg -3'
miRNA:   3'- -CAGACGGGGUGGUCGAACCGGGAGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.